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comparison commons/pyRepetUnit/fastaTranslation/allFrames/tests/Test_F_TranslateInAllFramesAndReplaceStopByX.py @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
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30:5677346472b5 31:0ab839023fe4
1 import os
2 import unittest
3 from commons.pyRepetUnit.fastaTranslation.allFrames.TranslateInAllFramesAndReplaceStopByX import TranslateInAllFramesAndReplaceStopByX
4 from commons.core.seq.Bioseq import Bioseq
5 from commons.core.utils.FileUtils import FileUtils
6
7 class Test_F_TranslateInAllFramesAndReplaceStopByX(unittest.TestCase):
8
9 def setUp(self):
10 self.bioseq = Bioseq()
11 self.preProcess = TranslateInAllFramesAndReplaceStopByX()
12 self._inputFile = "./datas/test_input_nt.fa"
13 self._outputFile = "./datas/PreProcessResult.fa"
14
15
16 def testAcceptanceTranslateAfastaFileInAllFrame(self):
17 self.preProcess.setInputFile(self._inputFile)
18 self.preProcess.setOutputFile(self._outputFile)
19 self.preProcess.run()
20 self.assertTrue(FileUtils.are2FilesIdentical(self._outputFile, "./datas/test_input_aa.fa"))
21 os.system("rm " + self._outputFile)
22
23 if __name__ == "__main__":
24 unittest.main()