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1 import os
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2 import unittest
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3 from commons.pyRepetUnit.fastaTranslation.allFrames.TranslateInAllFramesAndReplaceStopByX import TranslateInAllFramesAndReplaceStopByX
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4 from commons.core.seq.Bioseq import Bioseq
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5 from commons.core.utils.FileUtils import FileUtils
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6
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7 class Test_F_TranslateInAllFramesAndReplaceStopByX(unittest.TestCase):
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8
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9 def setUp(self):
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10 self.bioseq = Bioseq()
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11 self.preProcess = TranslateInAllFramesAndReplaceStopByX()
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12 self._inputFile = "./datas/test_input_nt.fa"
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13 self._outputFile = "./datas/PreProcessResult.fa"
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14
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15
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16 def testAcceptanceTranslateAfastaFileInAllFrame(self):
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17 self.preProcess.setInputFile(self._inputFile)
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18 self.preProcess.setOutputFile(self._outputFile)
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19 self.preProcess.run()
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20 self.assertTrue(FileUtils.are2FilesIdentical(self._outputFile, "./datas/test_input_aa.fa"))
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21 os.system("rm " + self._outputFile)
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22
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23 if __name__ == "__main__":
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24 unittest.main() |
