Mercurial > repos > yufei-luo > s_mart

comparison SMART/galaxy/mergeTranscriptLists.xml @ 15:440ceca58672

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Uploaded
author m-zytnicki
date Mon, 22 Apr 2013 11:08:07 -0400
parents 769e306b7933
children 94ab73e8a190
comparison
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14:c79b9ae3f65f 15:440ceca58672
43 #elif $OptionColinearOrAntiSens.OptionCA == 'AntiSens': 43 #elif $OptionColinearOrAntiSens.OptionCA == 'AntiSens':
44 -a 44 -a
45 #end if 45 #end if
46 46
47 -o $outputFileGff 47 -o $outputFileGff
48
49
50
51 </command> 48 </command>
52 49
53 <inputs> 50 <inputs>
54 <conditional name="formatType"> 51 <conditional name="formatType">
55 <param name="FormatInputFileName1" type="select" label="Input File Format 1"> 52 <param name="FormatInputFileName1" type="select" label="Input File Format 1">
143 140
144 <outputs> 141 <outputs>
145 <data name="outputFileGff" format="gff3" label="[mergeTranscriptLists]out file"/> 142 <data name="outputFileGff" format="gff3" label="[mergeTranscriptLists]out file"/>
146 </outputs> 143 </outputs>
147 144
145 <help>
146 The script is similar to *compare overlapping*, except that when data of two different sets overlap, they are merged. You can use the same parameters as *compare overlapping* and use them to look for transcription on both strands, for example.
147
148 Optionally, you can also add to the output all the elements from the first set which do not overlap with the second set.
149 </help>
148 </tool> 150 </tool>