Mercurial > repos > yufei-luo > s_mart
comparison commons/launcher/tests/Test_YassClusterLauncher.py @ 18:94ab73e8a190
Uploaded
| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 17:b0e8584489e6 | 18:94ab73e8a190 |
|---|---|
| 1 import unittest | |
| 2 from commons.launcher.YassClusterLauncher import YassClusterLauncher | |
| 3 | |
| 4 class Test_YassClusterLauncher( unittest.TestCase ): | |
| 5 | |
| 6 def setUp( self ): | |
| 7 self._i = YassClusterLauncher() | |
| 8 | |
| 9 | |
| 10 def tearDown( self ): | |
| 11 self._i = None | |
| 12 | |
| 13 | |
| 14 def test_getSpecificHelpAsString( self ): | |
| 15 exp = "" | |
| 16 exp += "\nspecific options:" | |
| 17 exp += "\n -s: name of the subject file (format='fasta')" | |
| 18 exp += "\n -p: parameters for 'yass'" | |
| 19 exp += "\n -Z: concatenate output files" | |
| 20 exp += "\n -A: same sequences (all-by-all)" | |
| 21 obs = self._i.getSpecificHelpAsString() | |
| 22 self.assertEqual( exp, obs ) | |
| 23 | |
| 24 | |
| 25 def test_setASpecificAttributeFromCmdLine( self ): | |
| 26 self._i.setASpecificAttributeFromCmdLine( "-s", "dummySubjectFile.fa" ) | |
| 27 self.assertEqual( "dummySubjectFile.fa", self._i.getSubjectFile() ) | |
| 28 | |
| 29 if __name__ == "__main__": | |
| 30 unittest.main() |