diff commons/launcher/tests/Test_YassClusterLauncher.py @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/launcher/tests/Test_YassClusterLauncher.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,30 @@
+import unittest
+from commons.launcher.YassClusterLauncher import YassClusterLauncher
+
+class Test_YassClusterLauncher( unittest.TestCase ):
+    
+    def setUp( self ):
+        self._i = YassClusterLauncher()
+        
+        
+    def tearDown( self ):
+        self._i = None
+        
+        
+    def test_getSpecificHelpAsString( self ):
+        exp = ""
+        exp += "\nspecific options:"
+        exp += "\n     -s: name of the subject file (format='fasta')"
+        exp += "\n     -p: parameters for 'yass'"
+        exp += "\n     -Z: concatenate output files"
+        exp += "\n     -A: same sequences (all-by-all)"
+        obs = self._i.getSpecificHelpAsString()
+        self.assertEqual( exp, obs )
+        
+        
+    def test_setASpecificAttributeFromCmdLine( self ):
+        self._i.setASpecificAttributeFromCmdLine( "-s", "dummySubjectFile.fa" )
+        self.assertEqual( "dummySubjectFile.fa", self._i.getSubjectFile() )
+        
+if __name__ == "__main__":
+        unittest.main()
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