Mercurial > repos > yufei-luo > s_mart
diff commons/launcher/tests/Test_YassClusterLauncher.py @ 18:94ab73e8a190
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author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:20:15 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/commons/launcher/tests/Test_YassClusterLauncher.py Mon Apr 29 03:20:15 2013 -0400 @@ -0,0 +1,30 @@ +import unittest +from commons.launcher.YassClusterLauncher import YassClusterLauncher + +class Test_YassClusterLauncher( unittest.TestCase ): + + def setUp( self ): + self._i = YassClusterLauncher() + + + def tearDown( self ): + self._i = None + + + def test_getSpecificHelpAsString( self ): + exp = "" + exp += "\nspecific options:" + exp += "\n -s: name of the subject file (format='fasta')" + exp += "\n -p: parameters for 'yass'" + exp += "\n -Z: concatenate output files" + exp += "\n -A: same sequences (all-by-all)" + obs = self._i.getSpecificHelpAsString() + self.assertEqual( exp, obs ) + + + def test_setASpecificAttributeFromCmdLine( self ): + self._i.setASpecificAttributeFromCmdLine( "-s", "dummySubjectFile.fa" ) + self.assertEqual( "dummySubjectFile.fa", self._i.getSubjectFile() ) + +if __name__ == "__main__": + unittest.main() \ No newline at end of file