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comparison commons/pyRepetUnit/hmmer/tests/datas/configTestFunctionalHmmpfamLauncherInparallel.cfg @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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17:b0e8584489e6 18:94ab73e8a190
1 [db_config]
2 user: oinizan
3 host: pisano
4 passwd: oinizan
5 dbname:repet_oinizan
6
7 [profil_search]
8 Evalue: 10
9 InputFormat: FASTA
10 ProfilDatabank: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/myhmms
11
12 [hmmer_config]
13 input_file: ./datas/test_input_nt.fa
14 output_file: ./datas/hmmpfam_output.align
15 result_dir: /home/oinizan/repet_integration/repet_results
16 query_dir: /home/oinizan/repet_integration/repet_datas/hmmer_in_parallel
17 tmp_dir: /home/oinizan/repet_integration/repet_tmp
18
19 [sge_config]
20 queue: main.q
21 groupid: fake
22
23 [parse_config]
24 scriptToLaunch: /home/oinizan/repet_integration/repet_pipe/repet_base/HmmOutput2alignAndTransformCoordInNtAndFilterScores_script.py