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diff commons/pyRepetUnit/hmmer/tests/datas/configTestFunctionalHmmpfamLauncherInparallel.cfg @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/pyRepetUnit/hmmer/tests/datas/configTestFunctionalHmmpfamLauncherInparallel.cfg	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,24 @@
+[db_config]
+user: oinizan
+host: pisano
+passwd: oinizan
+dbname:repet_oinizan
+
+[profil_search]
+Evalue: 10
+InputFormat: FASTA
+ProfilDatabank: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/myhmms
+
+[hmmer_config]
+input_file: ./datas/test_input_nt.fa
+output_file: ./datas/hmmpfam_output.align
+result_dir: /home/oinizan/repet_integration/repet_results
+query_dir: /home/oinizan/repet_integration/repet_datas/hmmer_in_parallel
+tmp_dir: /home/oinizan/repet_integration/repet_tmp
+
+[sge_config]
+queue: main.q
+groupid: fake
+
+[parse_config]
+scriptToLaunch: /home/oinizan/repet_integration/repet_pipe/repet_base/HmmOutput2alignAndTransformCoordInNtAndFilterScores_script.py