Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/FindOverlaps_optim.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
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| -1:000000000000 | 0:e0f8dcca02ed |
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| 1 <tool id="findOverlaps" name="findOverlaps"> | |
| 2 <description>Finds the overlapped reference reads.</description> | |
| 3 <command interpreter="python"> | |
| 4 ../Java/Python/FindOverlaps_optim.py -i $inputRef -j $inputQ -o $outputFileGff | |
| 5 </command> | |
| 6 | |
| 7 <inputs> | |
| 8 <param name="inputRef" type="data" label="Input Reference File" format="gff3"/> | |
| 9 <param name="inputQ" type="data" label="Input Query File" format="gff3"/> | |
| 10 </inputs> | |
| 11 | |
| 12 <outputs> | |
| 13 <data name="outputFileGff" format="gff3"/> | |
| 14 </outputs> | |
| 15 | |
| 16 </tool> |