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view smart_toolShed/SMART/galaxy/FindOverlaps_optim.xml @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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<tool id="findOverlaps" name="findOverlaps">
	<description>Finds the overlapped reference reads.</description>
	<command interpreter="python">
		../Java/Python/FindOverlaps_optim.py -i $inputRef -j $inputQ -o $outputFileGff 
	</command>
	
  <inputs>
    <param name="inputRef" type="data" label="Input Reference File" format="gff3"/>
    <param name="inputQ" type="data" label="Input Query File" format="gff3"/>
  </inputs>

	<outputs>
		<data name="outputFileGff" format="gff3"/>
	</outputs> 
	
</tool>