Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/getWigData.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:e0f8dcca02ed |
|---|---|
| 1 <tool id="getWigData" name="get wig data"> | |
| 2 <description>Compute the average data for some genomic coordinates using WIG files</description> | |
| 3 <command interpreter="python"> | |
| 4 ../Java/Python/getWigData.py -i $inputGff3File -f gff3 -w $inputWigFile -t $tagName -$strand -o $outputFile | |
| 5 </command> | |
| 6 | |
| 7 <inputs> | |
| 8 <param name="inputGff3File" type="data" label="Input Gff3 File (compulsory option)" format="gff3"/> | |
| 9 <param name="inputWigFile" type="data" label="Input Wig File (compulsory option)" format="wig"/> | |
| 10 <param name="tagName" type="text" value="None" label="tag option (compulsory option)" help="choose a tag name to write the wig information to output file."/> | |
| 11 <param name="strand" type="boolean" truevalue="-s" falsevalue="" checked="false" label="consider both strands separately."/> | |
| 12 </inputs> | |
| 13 | |
| 14 <outputs> | |
| 15 <data format="gff3" name="outputFile" label="[getWigData -> gff3] Output File"/> | |
| 16 </outputs> | |
| 17 </tool> |