Mercurial > repos > yufei-luo > s_mart
diff smart_toolShed/SMART/galaxy/getWigData.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author | yufei-luo |
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date | Thu, 17 Jan 2013 10:52:14 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/smart_toolShed/SMART/galaxy/getWigData.xml Thu Jan 17 10:52:14 2013 -0500 @@ -0,0 +1,17 @@ +<tool id="getWigData" name="get wig data"> + <description>Compute the average data for some genomic coordinates using WIG files</description> + <command interpreter="python"> + ../Java/Python/getWigData.py -i $inputGff3File -f gff3 -w $inputWigFile -t $tagName -$strand -o $outputFile + </command> + + <inputs> + <param name="inputGff3File" type="data" label="Input Gff3 File (compulsory option)" format="gff3"/> + <param name="inputWigFile" type="data" label="Input Wig File (compulsory option)" format="wig"/> + <param name="tagName" type="text" value="None" label="tag option (compulsory option)" help="choose a tag name to write the wig information to output file."/> + <param name="strand" type="boolean" truevalue="-s" falsevalue="" checked="false" label="consider both strands separately."/> + </inputs> + + <outputs> + <data format="gff3" name="outputFile" label="[getWigData -> gff3] Output File"/> + </outputs> +</tool>