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diff SMART/Java/Python/genome.fasta @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/Java/Python/genome.fasta	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,92 @@
+>chr1
+GTAATCAACTACCAATTCCAGCTCTCTTTTGACAACTGGTCTTATACCCACTTCCGTACACTTGCAACCC
+TCGTAAGACAATTGCAAATGAGTAATGGCCTTCCAATTAGCATTGGACGCCCTTGCACCCACGACTCACA
+GAGATCCCTCTCTGCACCCGATTCTCGAATCCACAGTGGATTCAATTCGCTCCTCGATACAGACCTACCC
+ATGGTCCATTCCGAAGGAACTTCTACCCCTACTCAACTCCTACGGCATCCCAACATCTGGTTTGGGAACC
+TCCCACCACCCCCACGCCGCCCACAAGACAATCGAGACTTTTCTCCTTTGCACCCACTGGTCTTTCCAGG
+CCACCACTCCCAGCTCCGTCATGTTCATGAAACCCAGCAAGTTCAACAAACTTGCCCAGGTAAACTCAAA
+CTTTCGGGAGCTGAAGAACTACCGCCTGCACCCCAACGACAGCACTCGTTACCCCTTCACATCACCAGAC
+CTTCCCGTTTTCCCCACCATTTTCATGCACGACGCCCTGATGTATTACCATCCGTCCCAGATCATGGACC
+TGTTCTTRCGGAAACCAAACCTCGAACGTCTGTACGCCAGCCTCGTAGTGCCACCCGAGGCCCATCTTTC
+CGACCAATCCTTCTACCCAAAGTTGTACACGTACACGACGACCCGCCACACTCTTCACTACGTCCCAGAG
+GGTCACGAAGCCGGCAGCTACAACCAACCGTCCGACGCCCACTCTTGGCTCCGAATCAATTCCATTCGCC
+TCGGCAACCACCACCTCTCAGTGACGATCCTGGAATCCTGGGGCCCCGTCCACTCGCTCCTCATTCAACG
+AGGGACCCCCCCCCCCGACCCATCACTCCAGGCCCCTCCAACACTCATGRCCTCAGACCTCTTTCGGTCT
+TACCAAGARCCTCGCCTCGACGTGGTCTCCTTCCGAATCCCCGACGCCATCGAACTTCCACAGGCCACAT
+TCCTCCAACAACCACTTCGAGACCGACTGGTCCCCCGAGCCGTCTACAACGCCCTGTTCACCTATACCAG
+AGCAGTCCGCACACTCCGAACTTCAGACCCAGCAGCATTCGTAAGGATGCACTCCTCCAAACCGGACCAC
+GATTGGGTCACCTCGAACGCCTGGGACAACCTGCAAACCTTCGCACTTCTGAACGTTCCCCTCCGACCAA
+ACGTCGTCTACCACGTTCTTCAGAGCCCAATCGCCTCCCTAAGCCTTTACCTGAGGCAACATTGGCGCCG
+TCTTACCGCCACCGCCGTCCCTATCCTCTCCTTCCTAACCCTCCTGCAGCGCTTCCTTCCATTGCCTATA
+CCTCTAGCAGAGGTAAAATCCATCACAGCCTTCCGAAGGGAGCTTTACCGAAAGAAGGAGCCCCACCACC
+CCCTCGACGTCTTCCATCTCCAGCACCGCGTCCGCAACTACCACTCCGCGATCTCGGCCGTACGCCCGGC
+TTCCCCACCCCACCAAAAACTCCCACACGCACTCCAGAAAGCCGCATTACTGCTTCTCCGACCGATATCG
+CCCCTCTTGACAGCGACCCCGTTCTTTCGGTCCGAACAGAAGTCCATGCTCCCGAACGCCGAACTTTCAT
+GGACCCTGAAGCGCTTCGCTCTGCCCTGGCAAGCCTCCCTAGTCCTCCTCGCTCTGTCGGAATCATCCAT
+ACTGCTCCACAAACTGTTCTCCCCGCCAACCCTCCAAGCCCAACACGACACCTACCACCGACATCTCCAC
+CCTGGATCCTACAGTCTCCAGTGGGAGAGGACGCCATTGTCGATTCCGAGGACGACAGCATTTCTTCCTT
+TCACTCCCACGACTTCGACAGCCCCTCCGGACCGCTCCGAAGCCAGTCTCCCTCCCGCTTTCGCCTCCAC
+CTTCGTTCCCCGTCCACCTCCAGCGGCATCGAGCCCTGGAGCCCAGCCTCCTACGACTACGGCAGCGCCC
+CCGACACCGATTGAACCCACCCAACGCACCCATCAAAATTCTGACCTCGCGCTCGAAAGTTCAACCTCAA
+CCGAACCTCCCCCACCCCCCATCCGATCCCCCGACAYGACGCCCTCCGCCCCCGTCCTTTTCCCAGAAAT
+CAACTCACCTCGTCGTTTTCCCCCCCAACTTCCCGCCACGCCCGATCTCGAACCCGCCCACACTCCACCC
+CCTCTTTCCATCCCGCACCAAGATCCGACTGACTCAGCGGACCCCCTCATGGGCTCCCACCTTTTGCACC
+ATTCACTGCCTGCACCCCCCACCCACCCCCTTCCATCTTCACAGCTGTTACCCGCACCTTTAACGAACGA
+CCCCACTGCGATCGGCCCGGTGCTCCCCTTTGAAGAACTCCACCCACGCAGGTACCCTGAAAACACCGCC
+ACTTTCCTCACGAGGCTCCGTTCACTCCCATCAAACCATCTTCCACAACCCACCTTGAATTGTCTTCTCT
+CCGCTGTCTCCGACCAAACCAAGGTTTCCGAGGAGCACCTCTGGGAGTCCCTACAGACAATTCTCCCAGA
+CAGCCAACTCAGCAATGAAGAGACCAACACTCTCGGGCTTTCAACTGAACACCTCACTGCGTTGGCCCAC
+CTTTACAACTTCCAGGCAACCGTTTACTCCGATCGCGGCCCCATCCTCTTCGGCCCCTCCGACACCATCA
+AGAGGATAGACATCACCCACACCACCGGACCGCCATCCCACTTTTCACCCGGCAAAAGACTCCTAGGCAG
+CCAACCCTCCGCTAAGGGCCATCCCTCCGACCCACTCATCAGAGCCATGAAGTCTTTCAAAGTATCCGGC
+AACTACCTTCCCTTCTCTGAGGCCCACAACCATCCCACCTCCATCTCACACGCCAAGAACTTGATTTCAA
+ACATGAAGAATGGTTTCGACGGCGTCCTCTCCCTCCTCGACGTCTCCACGGGCCAACGAACCGGACCCRC
+CCCCAAAGAACGGATCATCCAGATAGACCACTACCTTGACACCAACCCCGGCAAAACCACTCCTGTGGTG
+CATTTCGCTGGCTTCGCTGGCTGTGGGAAGACATATCCGATCCAACAGCTCCTCAAAACCAAACTGTTCA
+AAGACTTCCGGGTCTCTTGCCCTACCACAGAACTCAGAACCGAATGGAAGACAGCGATGGAACTCCACGG
+CTCCCAGTCATGGCGCTTTAACACTTGGGAGTCTTCCATTCTCAAGTCATCCAGAATCCTGGTCATTGAT
+GAGATCTACAAAATGCCAAGAGGGTACCTCGACCTTTCCATCCTCGCCGACCCCGCCCTCGAGCTCGTCA
+TAATTCTCGGCGATCCTCTMCAGGGCGAGTACCACTCCCAATCGAAAGACTCATCCAACCACCGCCTTCC
+CTCTGAAACTCTCAGGCTGCTACCATACATCGACATGTACTGCTGGTGGAGTTACCGCATTCCTCAATGC
+ATCGCCCGACTCTTCCAAATTCACAGCTTCAATGCCTGGCAAGGAGTTATCGGGTCCGTTTCCACTCCCC
+ATGATCAATCCCCCGTCCTCACCAACAGTCATGCCTCATCTCTTACCTTCAACAGCCTGGGATATCGCTC
+CTGCACGATCAGCTCTAGCCAAGGCCTCACATTCTGCGACCCCGCCATAATCGTCCTGGACAACTACACC
+AAGTGGCTCTCCTCGGCTAACGGCCTCGTCGCCCTCACTCGATCCAGATCAGGCGTCCAATTCATGKGCC
+CCTCTTCCTACGTCGGGGGAACCAACGGCTCTTCCGCCATGTTTTCCGACGCCTTCAACAACAGCCTCAT
+CATCATGGATCGCTACTTCCCATCCCTGTTCCCGCAACTCAAGCTCATCACCTCCCCCCTCACAACTCGC
+GGCCCCAAACTCAACGGGGCCACCCCCAGCGCATCCCCCACCCACCGTTCGCCAAACTTCCACCTTCCCC
+CACACATTCCGCTCTCCTATGATCGTGATTTTGTTACGGTGAACCCAACTCTCCCCGACCAAGGACCCGA
+AACAAGACTCGACACCCACTTTCTCCCACCGTCTCGGCTCCCTCTCCATTTCGATCTCCCACCGGCTATC
+ACCCCACCCCCGGTTTCCACAAGCGTCGACCCGCCACAAGCGAAAGCTAGCCCCGTCTACCCAGGCGAGT
+TCTTCGATTCTCTGGCGGCGTTCTTCTTACCAGCACACGACCCATCAACAAGGGAAATACTCCACAAAGA
+TCAATCTAGCAACCAGTTCCCCTGGTTCGACCGACCCTTCAGCCTGTCCTGCCAGCCCTCAAGTCTGATT
+TCCGCCAAGCATGCACCCAACCATGATCCGACCCTTCTACCGGCCTCCATCAACAAACGCTTGCGATTCA
+GACCCAGTGACTCACCGCACCAAATCACCGCGGACGACGTGGTCCTAGGCCTGCAACTCTTTCACTCTCT
+TTGTCGCGCCTACTCACGTCAACCCAACAGCACCGTTCCATTCAACCCTGAACTTTTCGCAGAATGCATC
+TCTCTGAATGAGTACGCACAGCTCAGTTCCAAAACCCAATCCACCATAGTGGCCAACGCTTCACGCTCCG
+ACCCAGACTGGCGACACACCACCGTCAAGATCTTCGCGAAAGCCCAACACAAAGTCAACGACGGCTCCAT
+CTTCGGCTCGTGGAAAGCCTGCCAGACCCTCGCACTCATGCACGACTACGTGATTCTGGTTCTTGGACCC
+GTCAAGAAATACCAGAGAATCTTCGACAACGCTGACCGGCCACCTAACATCTACTCACACTGCGGCAAGA
+CACCCAACCAACTTCGAGATTGGTGCCAGGAACATCTCACTCATTCCACCCCCAAAATCGCAAACGACTA
+CACCGCTTTCGACCAGTCCCAGCATGGAGAATCCGTGGTCCTTGAAGCCCTCAAAATGAAGAGACTGAAC
+ATTCCRAGCCATCTGATTCAGCTCCACGTCCACCTCAAGACCAACGTCTCCACCCAGTTCGGCCCCCTCA
+CATGCATGCGCCTAACCGGGGAACCCGGAACTTACGACGACAACACTGACTATAACCTCGCAGTCATCTA
+CTCCCAGTATGACGTCGGTTCCTGCCCCATCATGGTTTCTGGCGACGACTCACTCATAGACCACCCCCTT
+CCCACTCGCCACGACTGGCCATCCGTTCTCAAACGCCTCCACCTCCGCTTCAAACTTGAACTCACCTCTC
+ACCCCCTCTTCTGTGGCTACTACGTCGGTCCAGCCGGCTGCATCCGCAACCCCCTGGCCCTTTTCTGCAA
+GCTCATGATCGCCGTGGACGACGACGCCCTCGACGACCGACGACTCAGCTACCTCACCGAGTTCACCACC
+GGACACCTCCTTGGCGAATCACTGTGGCACCTCCTCCCTGAAACCCATGTTCAGTATCAGTCAGCCTGCT
+TTGACTTCTTCTGCAGGCGGTGCCCAAGACACGAGAAAATGCTCCTCGACGACTCCACACCCGCACTCAG
+CCTCCTCGAACGAATCACTTCTTCGCCGAGGTGGCTCACCAAAAATGCCATGTACCTCCTCCCTGCCAAG
+CTACGACTGGCCATCACCTCTCTATCTCAAACGCAGTCCTTCCCAGAATCCATCGAGGTTTCCCACGCTG
+AGTCTGAATTGCTTCACTACGTCCAATAGCAATCAGCCCCAACATGGAAATCGACAAAGAACTCGCCCCC
+CAAGACCGCACCGTCACCGTCGCCACCGTCCTACCAGCTGTCCCCGGCCCATCACCTCTCACCATCAAAC
+AACCGTTYCAGTCTGAAGTTCTATTTGCTGGAACCAAAGATGCCGAGGCTTCTCTCACCATCGCCAACAT
+CGACAGCGTTTCCACCCTCACCACCTTCTACCGTCATGCATCTCTGGAATCACTCTGGGTCACTATCCAT
+CCCACCTTGCAAGCCCCAGCTTTCCCGACCACGGTCGGTGTCTGCTGGGTACCCGCCAATTCTCCAGTCA
+CTCCCGCCCAAATCACCAAGACCTATGGTGGCCAGATCTTCTGCATTGGCGGCGCCATCAACACCCTCTC
+ACCTCTCATCGTCAAGTGCCCACTTGAAATGATGAACCCCCGGGTCAAGGATTCGATTCAGTACCTTGAC
+TCGCCCAAACTCCTCATCTCCATCACCGCTCAACCCACCGCTCCCCCCGCATCGACCTGCATAATAACTG
+TATCAGGAACTCTCTCGATGCACTCTCCGCTCATCACGGACACTTCCACCTAAGTTCTCGATCTTTAAAA
+TCGTTAGCTCGCCAGTTAGCGAGGTCTGTCCCCACACGACAGATAATCGGGTGCAACTCCCGCCCCTCTT
+CCGAGGGTCATCGGAACC