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annotate SMART/Java/Python/genome.fasta @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
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31
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1 >chr1
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2 GTAATCAACTACCAATTCCAGCTCTCTTTTGACAACTGGTCTTATACCCACTTCCGTACACTTGCAACCC
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3 TCGTAAGACAATTGCAAATGAGTAATGGCCTTCCAATTAGCATTGGACGCCCTTGCACCCACGACTCACA
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4 GAGATCCCTCTCTGCACCCGATTCTCGAATCCACAGTGGATTCAATTCGCTCCTCGATACAGACCTACCC
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5 ATGGTCCATTCCGAAGGAACTTCTACCCCTACTCAACTCCTACGGCATCCCAACATCTGGTTTGGGAACC
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6 TCCCACCACCCCCACGCCGCCCACAAGACAATCGAGACTTTTCTCCTTTGCACCCACTGGTCTTTCCAGG
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7 CCACCACTCCCAGCTCCGTCATGTTCATGAAACCCAGCAAGTTCAACAAACTTGCCCAGGTAAACTCAAA
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8 CTTTCGGGAGCTGAAGAACTACCGCCTGCACCCCAACGACAGCACTCGTTACCCCTTCACATCACCAGAC
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9 CTTCCCGTTTTCCCCACCATTTTCATGCACGACGCCCTGATGTATTACCATCCGTCCCAGATCATGGACC
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10 TGTTCTTRCGGAAACCAAACCTCGAACGTCTGTACGCCAGCCTCGTAGTGCCACCCGAGGCCCATCTTTC
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11 CGACCAATCCTTCTACCCAAAGTTGTACACGTACACGACGACCCGCCACACTCTTCACTACGTCCCAGAG
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12 GGTCACGAAGCCGGCAGCTACAACCAACCGTCCGACGCCCACTCTTGGCTCCGAATCAATTCCATTCGCC
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13 TCGGCAACCACCACCTCTCAGTGACGATCCTGGAATCCTGGGGCCCCGTCCACTCGCTCCTCATTCAACG
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14 AGGGACCCCCCCCCCCGACCCATCACTCCAGGCCCCTCCAACACTCATGRCCTCAGACCTCTTTCGGTCT
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15 TACCAAGARCCTCGCCTCGACGTGGTCTCCTTCCGAATCCCCGACGCCATCGAACTTCCACAGGCCACAT
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16 TCCTCCAACAACCACTTCGAGACCGACTGGTCCCCCGAGCCGTCTACAACGCCCTGTTCACCTATACCAG
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17 AGCAGTCCGCACACTCCGAACTTCAGACCCAGCAGCATTCGTAAGGATGCACTCCTCCAAACCGGACCAC
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18 GATTGGGTCACCTCGAACGCCTGGGACAACCTGCAAACCTTCGCACTTCTGAACGTTCCCCTCCGACCAA
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19 ACGTCGTCTACCACGTTCTTCAGAGCCCAATCGCCTCCCTAAGCCTTTACCTGAGGCAACATTGGCGCCG
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20 TCTTACCGCCACCGCCGTCCCTATCCTCTCCTTCCTAACCCTCCTGCAGCGCTTCCTTCCATTGCCTATA
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21 CCTCTAGCAGAGGTAAAATCCATCACAGCCTTCCGAAGGGAGCTTTACCGAAAGAAGGAGCCCCACCACC
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22 CCCTCGACGTCTTCCATCTCCAGCACCGCGTCCGCAACTACCACTCCGCGATCTCGGCCGTACGCCCGGC
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23 TTCCCCACCCCACCAAAAACTCCCACACGCACTCCAGAAAGCCGCATTACTGCTTCTCCGACCGATATCG
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24 CCCCTCTTGACAGCGACCCCGTTCTTTCGGTCCGAACAGAAGTCCATGCTCCCGAACGCCGAACTTTCAT
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25 GGACCCTGAAGCGCTTCGCTCTGCCCTGGCAAGCCTCCCTAGTCCTCCTCGCTCTGTCGGAATCATCCAT
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26 ACTGCTCCACAAACTGTTCTCCCCGCCAACCCTCCAAGCCCAACACGACACCTACCACCGACATCTCCAC
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27 CCTGGATCCTACAGTCTCCAGTGGGAGAGGACGCCATTGTCGATTCCGAGGACGACAGCATTTCTTCCTT
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28 TCACTCCCACGACTTCGACAGCCCCTCCGGACCGCTCCGAAGCCAGTCTCCCTCCCGCTTTCGCCTCCAC
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29 CTTCGTTCCCCGTCCACCTCCAGCGGCATCGAGCCCTGGAGCCCAGCCTCCTACGACTACGGCAGCGCCC
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30 CCGACACCGATTGAACCCACCCAACGCACCCATCAAAATTCTGACCTCGCGCTCGAAAGTTCAACCTCAA
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31 CCGAACCTCCCCCACCCCCCATCCGATCCCCCGACAYGACGCCCTCCGCCCCCGTCCTTTTCCCAGAAAT
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32 CAACTCACCTCGTCGTTTTCCCCCCCAACTTCCCGCCACGCCCGATCTCGAACCCGCCCACACTCCACCC
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33 CCTCTTTCCATCCCGCACCAAGATCCGACTGACTCAGCGGACCCCCTCATGGGCTCCCACCTTTTGCACC
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34 ATTCACTGCCTGCACCCCCCACCCACCCCCTTCCATCTTCACAGCTGTTACCCGCACCTTTAACGAACGA
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35 CCCCACTGCGATCGGCCCGGTGCTCCCCTTTGAAGAACTCCACCCACGCAGGTACCCTGAAAACACCGCC
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36 ACTTTCCTCACGAGGCTCCGTTCACTCCCATCAAACCATCTTCCACAACCCACCTTGAATTGTCTTCTCT
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37 CCGCTGTCTCCGACCAAACCAAGGTTTCCGAGGAGCACCTCTGGGAGTCCCTACAGACAATTCTCCCAGA
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38 CAGCCAACTCAGCAATGAAGAGACCAACACTCTCGGGCTTTCAACTGAACACCTCACTGCGTTGGCCCAC
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39 CTTTACAACTTCCAGGCAACCGTTTACTCCGATCGCGGCCCCATCCTCTTCGGCCCCTCCGACACCATCA
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40 AGAGGATAGACATCACCCACACCACCGGACCGCCATCCCACTTTTCACCCGGCAAAAGACTCCTAGGCAG
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41 CCAACCCTCCGCTAAGGGCCATCCCTCCGACCCACTCATCAGAGCCATGAAGTCTTTCAAAGTATCCGGC
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42 AACTACCTTCCCTTCTCTGAGGCCCACAACCATCCCACCTCCATCTCACACGCCAAGAACTTGATTTCAA
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43 ACATGAAGAATGGTTTCGACGGCGTCCTCTCCCTCCTCGACGTCTCCACGGGCCAACGAACCGGACCCRC
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44 CCCCAAAGAACGGATCATCCAGATAGACCACTACCTTGACACCAACCCCGGCAAAACCACTCCTGTGGTG
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45 CATTTCGCTGGCTTCGCTGGCTGTGGGAAGACATATCCGATCCAACAGCTCCTCAAAACCAAACTGTTCA
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46 AAGACTTCCGGGTCTCTTGCCCTACCACAGAACTCAGAACCGAATGGAAGACAGCGATGGAACTCCACGG
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47 CTCCCAGTCATGGCGCTTTAACACTTGGGAGTCTTCCATTCTCAAGTCATCCAGAATCCTGGTCATTGAT
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48 GAGATCTACAAAATGCCAAGAGGGTACCTCGACCTTTCCATCCTCGCCGACCCCGCCCTCGAGCTCGTCA
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49 TAATTCTCGGCGATCCTCTMCAGGGCGAGTACCACTCCCAATCGAAAGACTCATCCAACCACCGCCTTCC
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50 CTCTGAAACTCTCAGGCTGCTACCATACATCGACATGTACTGCTGGTGGAGTTACCGCATTCCTCAATGC
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51 ATCGCCCGACTCTTCCAAATTCACAGCTTCAATGCCTGGCAAGGAGTTATCGGGTCCGTTTCCACTCCCC
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52 ATGATCAATCCCCCGTCCTCACCAACAGTCATGCCTCATCTCTTACCTTCAACAGCCTGGGATATCGCTC
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53 CTGCACGATCAGCTCTAGCCAAGGCCTCACATTCTGCGACCCCGCCATAATCGTCCTGGACAACTACACC
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54 AAGTGGCTCTCCTCGGCTAACGGCCTCGTCGCCCTCACTCGATCCAGATCAGGCGTCCAATTCATGKGCC
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55 CCTCTTCCTACGTCGGGGGAACCAACGGCTCTTCCGCCATGTTTTCCGACGCCTTCAACAACAGCCTCAT
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56 CATCATGGATCGCTACTTCCCATCCCTGTTCCCGCAACTCAAGCTCATCACCTCCCCCCTCACAACTCGC
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57 GGCCCCAAACTCAACGGGGCCACCCCCAGCGCATCCCCCACCCACCGTTCGCCAAACTTCCACCTTCCCC
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58 CACACATTCCGCTCTCCTATGATCGTGATTTTGTTACGGTGAACCCAACTCTCCCCGACCAAGGACCCGA
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59 AACAAGACTCGACACCCACTTTCTCCCACCGTCTCGGCTCCCTCTCCATTTCGATCTCCCACCGGCTATC
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60 ACCCCACCCCCGGTTTCCACAAGCGTCGACCCGCCACAAGCGAAAGCTAGCCCCGTCTACCCAGGCGAGT
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61 TCTTCGATTCTCTGGCGGCGTTCTTCTTACCAGCACACGACCCATCAACAAGGGAAATACTCCACAAAGA
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62 TCAATCTAGCAACCAGTTCCCCTGGTTCGACCGACCCTTCAGCCTGTCCTGCCAGCCCTCAAGTCTGATT
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63 TCCGCCAAGCATGCACCCAACCATGATCCGACCCTTCTACCGGCCTCCATCAACAAACGCTTGCGATTCA
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64 GACCCAGTGACTCACCGCACCAAATCACCGCGGACGACGTGGTCCTAGGCCTGCAACTCTTTCACTCTCT
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65 TTGTCGCGCCTACTCACGTCAACCCAACAGCACCGTTCCATTCAACCCTGAACTTTTCGCAGAATGCATC
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66 TCTCTGAATGAGTACGCACAGCTCAGTTCCAAAACCCAATCCACCATAGTGGCCAACGCTTCACGCTCCG
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67 ACCCAGACTGGCGACACACCACCGTCAAGATCTTCGCGAAAGCCCAACACAAAGTCAACGACGGCTCCAT
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68 CTTCGGCTCGTGGAAAGCCTGCCAGACCCTCGCACTCATGCACGACTACGTGATTCTGGTTCTTGGACCC
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69 GTCAAGAAATACCAGAGAATCTTCGACAACGCTGACCGGCCACCTAACATCTACTCACACTGCGGCAAGA
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70 CACCCAACCAACTTCGAGATTGGTGCCAGGAACATCTCACTCATTCCACCCCCAAAATCGCAAACGACTA
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71 CACCGCTTTCGACCAGTCCCAGCATGGAGAATCCGTGGTCCTTGAAGCCCTCAAAATGAAGAGACTGAAC
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72 ATTCCRAGCCATCTGATTCAGCTCCACGTCCACCTCAAGACCAACGTCTCCACCCAGTTCGGCCCCCTCA
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73 CATGCATGCGCCTAACCGGGGAACCCGGAACTTACGACGACAACACTGACTATAACCTCGCAGTCATCTA
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74 CTCCCAGTATGACGTCGGTTCCTGCCCCATCATGGTTTCTGGCGACGACTCACTCATAGACCACCCCCTT
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75 CCCACTCGCCACGACTGGCCATCCGTTCTCAAACGCCTCCACCTCCGCTTCAAACTTGAACTCACCTCTC
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76 ACCCCCTCTTCTGTGGCTACTACGTCGGTCCAGCCGGCTGCATCCGCAACCCCCTGGCCCTTTTCTGCAA
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77 GCTCATGATCGCCGTGGACGACGACGCCCTCGACGACCGACGACTCAGCTACCTCACCGAGTTCACCACC
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78 GGACACCTCCTTGGCGAATCACTGTGGCACCTCCTCCCTGAAACCCATGTTCAGTATCAGTCAGCCTGCT
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79 TTGACTTCTTCTGCAGGCGGTGCCCAAGACACGAGAAAATGCTCCTCGACGACTCCACACCCGCACTCAG
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80 CCTCCTCGAACGAATCACTTCTTCGCCGAGGTGGCTCACCAAAAATGCCATGTACCTCCTCCCTGCCAAG
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81 CTACGACTGGCCATCACCTCTCTATCTCAAACGCAGTCCTTCCCAGAATCCATCGAGGTTTCCCACGCTG
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82 AGTCTGAATTGCTTCACTACGTCCAATAGCAATCAGCCCCAACATGGAAATCGACAAAGAACTCGCCCCC
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83 CAAGACCGCACCGTCACCGTCGCCACCGTCCTACCAGCTGTCCCCGGCCCATCACCTCTCACCATCAAAC
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84 AACCGTTYCAGTCTGAAGTTCTATTTGCTGGAACCAAAGATGCCGAGGCTTCTCTCACCATCGCCAACAT
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85 CGACAGCGTTTCCACCCTCACCACCTTCTACCGTCATGCATCTCTGGAATCACTCTGGGTCACTATCCAT
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86 CCCACCTTGCAAGCCCCAGCTTTCCCGACCACGGTCGGTGTCTGCTGGGTACCCGCCAATTCTCCAGTCA
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87 CTCCCGCCCAAATCACCAAGACCTATGGTGGCCAGATCTTCTGCATTGGCGGCGCCATCAACACCCTCTC
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88 ACCTCTCATCGTCAAGTGCCCACTTGAAATGATGAACCCCCGGGTCAAGGATTCGATTCAGTACCTTGAC
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89 TCGCCCAAACTCCTCATCTCCATCACCGCTCAACCCACCGCTCCCCCCGCATCGACCTGCATAATAACTG
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90 TATCAGGAACTCTCTCGATGCACTCTCCGCTCATCACGGACACTTCCACCTAAGTTCTCGATCTTTAAAA
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91 TCGTTAGCTCGCCAGTTAGCGAGGTCTGTCCCCACACGACAGATAATCGGGTGCAACTCCCGCCCCTCTT
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92 CCGAGGGTCATCGGAACC