Mercurial > repos > yufei-luo > s_mart
diff SMART/bacteriaRegulatoryRegion_Detection/coverageGff.xml @ 31:0ab839023fe4
Uploaded
author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMART/bacteriaRegulatoryRegion_Detection/coverageGff.xml Tue Apr 30 14:33:21 2013 -0400 @@ -0,0 +1,17 @@ +<tool id="coverageGff" name="coverage Gff"> + <description>Computes reads coverage form a "nbElements" tag and writes the calculated coverage in a gff3 out file.</description> + <command interpreter="perl"> coverageGff.pl -i $inputFile -l $readSize > $outputFile </command> + <inputs> + <param name="inputFile" type="data" label="Input File" format="gff"/> + <param name="readSize" type="integer" value="38" help="The size of read, default: 38nt"/> + + </inputs> + + <outputs> + <data format="gff3" name="outputFile" label="[coveragePl] Output File"/> + </outputs> + + <help> + command example: perl coverageGff.pl -i *_trans_inIG.gff > *_trans_inIG_cov.gff + </help> +</tool>