Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/ConvertTranscriptFile_BlastToSam.xml @ 31:0ab839023fe4

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 769e306b7933
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/ConvertTranscriptFile_BlastToSam.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,15 @@
+<tool id="ConvertTranscriptFile_BlastToSam" name="Blast (-m 8) -> Sam">
+  <description>Convert Blast (-m 8) File to Sam File.</description>
+  <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f blast -o $outputFile -g sam yes 2>$logFile </command>
+  <inputs>
+    <param name="inputFile" type="data" label="Input File" format="tabular"/>
+  </inputs>
+
+  <outputs>
+    <data format="sam" name="outputFile" label="[blast -> sam] Output File"/>
+    <data format="txt" name="logFile" label="[blast -> sam] Log File"/>
+  </outputs>
+
+  <help>
+  </help>
+</tool>