Mercurial > repos > yufei-luo > s_mart
diff commons/launcher/tests/Test_F_LaunchLastZ.py @ 31:0ab839023fe4
Uploaded
author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 (2013-04-30) |
parents | 94ab73e8a190 |
children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/commons/launcher/tests/Test_F_LaunchLastZ.py Tue Apr 30 14:33:21 2013 -0400 @@ -0,0 +1,31 @@ +import unittest +import os +from commons.core.utils.FileUtils import FileUtils +from commons.launcher.LaunchLastZ import LaunchLastZ + +class Test_F_LaunchLastZ(unittest.TestCase): + + def setUp(self): + self._inFastaFileName = "%s/Tools/input_TestFLastZ.fa" % os.environ["REPET_DATA"] + self._expAxtFileName = "%s/Tools/exp_TestFLastZ.axt" % os.environ["REPET_DATA"] + self._obsAxtFileName = "obsLastZ.axt" + + def tearDown(self): + try: + os.remove(self._obsAxtFileName) + except:pass + + def test_run(self): + ilauncher = LaunchLastZ(self._inFastaFileName, self._inFastaFileName, self._obsAxtFileName,verbosity=1) + ilauncher.run() + self.assertTrue(FileUtils.are2FilesIdentical(self._expAxtFileName, self._obsAxtFileName)) + + def test_run_as_script(self): + #FIXME : change path + cmd = 'python %s/commons/launcher/LaunchLastZ.py -q %s -r %s -o %s' % (os.environ["REPET_PATH"], self._inFastaFileName, self._inFastaFileName, self._obsAxtFileName) + os.system(cmd) + self.assertTrue(FileUtils.are2FilesIdentical(self._expAxtFileName, self._obsAxtFileName)) + + +if __name__ == "__main__": + unittest.main() \ No newline at end of file