Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/FindOverlaps_optim.xml @ 6:769e306b7933

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Change the repository level.
author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/FindOverlaps_optim.xml	Fri Jan 18 04:54:14 2013 -0500
@@ -0,0 +1,16 @@
+<tool id="findOverlaps" name="findOverlaps">
+	<description>Finds the overlapped reference reads.</description>
+	<command interpreter="python">
+		../Java/Python/FindOverlaps_optim.py -i $inputRef -j $inputQ -o $outputFileGff 
+	</command>
+	
+  <inputs>
+    <param name="inputRef" type="data" label="Input Reference File" format="gff3"/>
+    <param name="inputQ" type="data" label="Input Query File" format="gff3"/>
+  </inputs>
+
+	<outputs>
+		<data name="outputFileGff" format="gff3"/>
+	</outputs> 
+	
+</tool>
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