--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/pyRepetUnit/align/hmmOutputParsing/tests/Test_F_HmmscanOutput2align.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,27 @@
+import os
+import unittest
+from commons.pyRepetUnit.align.hmmOutputParsing.HmmscanOutput2align import HmmscanOutput2align
+from commons.core.utils.FileUtils import FileUtils 
+
+CURRENT_DIR = os.getcwd()
+
+class Test_F_HmmscanOutput2align(unittest.TestCase):
+
+    def setUp(self):
+        self.hmmscanOutput2align = HmmscanOutput2align()
+        self._inputFile = os.environ["REPET_PATH"] + "/commons/pyRepetUnit/hmmer/hmmOutput/tests/datas/hmmscanOutput"
+        self._outputFile = "./datas/test_hmmscanOutput.align"
+        os.chdir(CURRENT_DIR)
+
+    def testParseHmmscanOutput2align(self):
+        self.hmmscanOutput2align.setInputFile(self._inputFile)
+        self.hmmscanOutput2align.setOutputFile(self._outputFile)
+        self.hmmscanOutput2align.run()
+        expectedFile = os.environ["REPET_PATH"] + "/commons/pyRepetUnit/hmmer/hmmOutput/tests/datas/hmmscanOutput.align"
+        self.assertTrue(FileUtils.isRessourceExists(self._outputFile))
+        self.assertTrue(FileUtils.are2FilesIdentical(expectedFile, self._outputFile))
+        os.remove( self._outputFile )
+        
+
+if __name__ == "__main__":
+    unittest.main()
\ No newline at end of file