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1 import os
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2 import unittest
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3 from commons.pyRepetUnit.align.hmmOutputParsing.HmmscanOutput2align import HmmscanOutput2align
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4 from commons.core.utils.FileUtils import FileUtils
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5
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6 CURRENT_DIR = os.getcwd()
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7
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8 class Test_F_HmmscanOutput2align(unittest.TestCase):
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9
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10 def setUp(self):
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11 self.hmmscanOutput2align = HmmscanOutput2align()
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12 self._inputFile = os.environ["REPET_PATH"] + "/commons/pyRepetUnit/hmmer/hmmOutput/tests/datas/hmmscanOutput"
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13 self._outputFile = "./datas/test_hmmscanOutput.align"
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14 os.chdir(CURRENT_DIR)
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15
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16 def testParseHmmscanOutput2align(self):
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17 self.hmmscanOutput2align.setInputFile(self._inputFile)
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18 self.hmmscanOutput2align.setOutputFile(self._outputFile)
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19 self.hmmscanOutput2align.run()
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20 expectedFile = os.environ["REPET_PATH"] + "/commons/pyRepetUnit/hmmer/hmmOutput/tests/datas/hmmscanOutput.align"
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21 self.assertTrue(FileUtils.isRessourceExists(self._outputFile))
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22 self.assertTrue(FileUtils.are2FilesIdentical(expectedFile, self._outputFile))
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23 os.remove( self._outputFile )
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24
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25
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26 if __name__ == "__main__":
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27 unittest.main() |
