Mercurial > repos > yufei-luo > s_mart
diff smart_toolShed/SMART/Java/WindowsRegistry.java @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author | yufei-luo |
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date | Thu, 17 Jan 2013 10:52:14 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/smart_toolShed/SMART/Java/WindowsRegistry.java Thu Jan 17 10:52:14 2013 -0500 @@ -0,0 +1,387 @@ +import java.lang.reflect.InvocationTargetException; +import java.lang.reflect.Method; +import java.util.HashMap; +import java.util.Map; +import java.util.ArrayList; +import java.util.List; +import java.util.prefs.Preferences; + +public class WindowsRegistry { + public static final int HKEY_CURRENT_USER = 0x80000001; + public static final int HKEY_LOCAL_MACHINE = 0x80000002; + public static final int REG_SUCCESS = 0; + public static final int REG_NOTFOUND = 2; + public static final int REG_ACCESSDENIED = 5; + + private static final int KEY_ALL_ACCESS = 0xf003f; + private static final int KEY_READ = 0x20019; + private static Preferences userRoot = Preferences.userRoot(); + private static Preferences systemRoot = Preferences.systemRoot(); + private static Class<? extends Preferences> userClass = userRoot.getClass(); + private static Method regOpenKey = null; + private static Method regCloseKey = null; + private static Method regQueryValueEx = null; + private static Method regEnumValue = null; + private static Method regQueryInfoKey = null; + private static Method regEnumKeyEx = null; + private static Method regCreateKeyEx = null; + private static Method regSetValueEx = null; + private static Method regDeleteKey = null; + private static Method regDeleteValue = null; + + static { + try { + regOpenKey = userClass.getDeclaredMethod("WindowsRegOpenKey", + new Class[] { int.class, byte[].class, int.class }); + regOpenKey.setAccessible(true); + regCloseKey = userClass.getDeclaredMethod("WindowsRegCloseKey", + new Class[] { int.class }); + regCloseKey.setAccessible(true); + regQueryValueEx = userClass.getDeclaredMethod("WindowsRegQueryValueEx", + new Class[] { int.class, byte[].class }); + regQueryValueEx.setAccessible(true); + regEnumValue = userClass.getDeclaredMethod("WindowsRegEnumValue", + new Class[] { int.class, int.class, int.class }); + regEnumValue.setAccessible(true); + regQueryInfoKey = userClass.getDeclaredMethod("WindowsRegQueryInfoKey1", + new Class[] { int.class }); + regQueryInfoKey.setAccessible(true); + regEnumKeyEx = userClass.getDeclaredMethod( + "WindowsRegEnumKeyEx", new Class[] { int.class, int.class, + int.class }); + regEnumKeyEx.setAccessible(true); + regCreateKeyEx = userClass.getDeclaredMethod( + "WindowsRegCreateKeyEx", new Class[] { int.class, + byte[].class }); + regCreateKeyEx.setAccessible(true); + regSetValueEx = userClass.getDeclaredMethod( + "WindowsRegSetValueEx", new Class[] { int.class, + byte[].class, byte[].class }); + regSetValueEx.setAccessible(true); + regDeleteValue = userClass.getDeclaredMethod( + "WindowsRegDeleteValue", new Class[] { int.class, + byte[].class }); + regDeleteValue.setAccessible(true); + regDeleteKey = userClass.getDeclaredMethod( + "WindowsRegDeleteKey", new Class[] { int.class, + byte[].class }); + regDeleteKey.setAccessible(true); + } + catch (Exception e) { + e.printStackTrace(); + } + } + + private WindowsRegistry() { } + + /** + * Read a value from key and value name + * @param hkey HKEY_CURRENT_USER/HKEY_LOCAL_MACHINE + * @param key + * @param valueName + * @return the value + * @throws IllegalArgumentException + * @throws IllegalAccessException + * @throws InvocationTargetException + */ + public static String readString(int hkey, String key, String valueName) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + if (hkey == HKEY_LOCAL_MACHINE) { + return readString(systemRoot, hkey, key, valueName); + } + else if (hkey == HKEY_CURRENT_USER) { + return readString(userRoot, hkey, key, valueName); + } + else { + throw new IllegalArgumentException("hkey=" + hkey); + } + } + + /** + * Read value(s) and value name(s) form given key + * @param hkey HKEY_CURRENT_USER/HKEY_LOCAL_MACHINE + * @param key + * @return the value name(s) plus the value(s) + * @throws IllegalArgumentException + * @throws IllegalAccessException + * @throws InvocationTargetException + */ + public static Map<String, String> readStringValues(int hkey, String key) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + if (hkey == HKEY_LOCAL_MACHINE) { + return readStringValues(systemRoot, hkey, key); + } + else if (hkey == HKEY_CURRENT_USER) { + return readStringValues(userRoot, hkey, key); + } + else { + throw new IllegalArgumentException("hkey=" + hkey); + } + } + + /** + * Read the value name(s) from a given key + * @param hkey HKEY_CURRENT_USER/HKEY_LOCAL_MACHINE + * @param key + * @return the value name(s) + * @throws IllegalArgumentException + * @throws IllegalAccessException + * @throws InvocationTargetException + */ + public static List<String> readStringSubKeys(int hkey, String key) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + if (hkey == HKEY_LOCAL_MACHINE) { + return readStringSubKeys(systemRoot, hkey, key); + } + else if (hkey == HKEY_CURRENT_USER) { + return readStringSubKeys(userRoot, hkey, key); + } + else { + throw new IllegalArgumentException("hkey=" + hkey); + } + } + + /** + * Create a key + * @param hkey HKEY_CURRENT_USER/HKEY_LOCAL_MACHINE + * @param key + * @throws IllegalArgumentException + * @throws IllegalAccessException + * @throws InvocationTargetException + */ + public static void createKey(int hkey, String key) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + int [] ret; + if (hkey == HKEY_LOCAL_MACHINE) { + ret = createKey(systemRoot, hkey, key); + regCloseKey.invoke(systemRoot, new Object[] { new Integer(ret[0]) }); + } + else if (hkey == HKEY_CURRENT_USER) { + ret = createKey(userRoot, hkey, key); + regCloseKey.invoke(userRoot, new Object[] { new Integer(ret[0]) }); + } + else { + throw new IllegalArgumentException("hkey=" + hkey); + } + if (ret[1] != REG_SUCCESS) { + throw new IllegalArgumentException("rc=" + ret[1] + " key=" + key); + } + } + + /** + * Write a value in a given key/value name + * @param hkey + * @param key + * @param valueName + * @param value + * @throws IllegalArgumentException + * @throws IllegalAccessException + * @throws InvocationTargetException + */ + public static void writeStringValue + (int hkey, String key, String valueName, String value) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + if (hkey == HKEY_LOCAL_MACHINE) { + writeStringValue(systemRoot, hkey, key, valueName, value); + } + else if (hkey == HKEY_CURRENT_USER) { + writeStringValue(userRoot, hkey, key, valueName, value); + } + else { + throw new IllegalArgumentException("hkey=" + hkey); + } + } + + /** + * Delete a given key + * @param hkey + * @param key + * @throws IllegalArgumentException + * @throws IllegalAccessException + * @throws InvocationTargetException + */ + public static void deleteKey(int hkey, String key) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + int rc = -1; + if (hkey == HKEY_LOCAL_MACHINE) { + rc = deleteKey(systemRoot, hkey, key); + } + else if (hkey == HKEY_CURRENT_USER) { + rc = deleteKey(userRoot, hkey, key); + } + if (rc != REG_SUCCESS) { + throw new IllegalArgumentException("rc=" + rc + " key=" + key); + } + } + + /** + * delete a value from a given key/value name + * @param hkey + * @param key + * @param value + * @throws IllegalArgumentException + * @throws IllegalAccessException + * @throws InvocationTargetException + */ + public static void deleteValue(int hkey, String key, String value) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + int rc = -1; + if (hkey == HKEY_LOCAL_MACHINE) { + rc = deleteValue(systemRoot, hkey, key, value); + } + else if (hkey == HKEY_CURRENT_USER) { + rc = deleteValue(userRoot, hkey, key, value); + } + if (rc != REG_SUCCESS) { + throw new IllegalArgumentException("rc=" + rc + " key=" + key + " value=" + value); + } + } + + // ===================== + + private static int deleteValue + (Preferences root, int hkey, String key, String value) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + int[] handles = (int[]) regOpenKey.invoke(root, new Object[] { + new Integer(hkey), toCstr(key), new Integer(KEY_ALL_ACCESS) }); + if (handles[1] != REG_SUCCESS) { + return handles[1]; // can be REG_NOTFOUND, REG_ACCESSDENIED + } + int rc =((Integer) regDeleteValue.invoke(root, + new Object[] { + new Integer(handles[0]), toCstr(value) + })).intValue(); + regCloseKey.invoke(root, new Object[] { new Integer(handles[0]) }); + return rc; + } + + private static int deleteKey(Preferences root, int hkey, String key) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + int rc =((Integer) regDeleteKey.invoke(root, + new Object[] { new Integer(hkey), toCstr(key) })).intValue(); + return rc; // can REG_NOTFOUND, REG_ACCESSDENIED, REG_SUCCESS + } + + private static String readString(Preferences root, int hkey, String key, String value) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + int[] handles = (int[]) regOpenKey.invoke(root, new Object[] { + new Integer(hkey), toCstr(key), new Integer(KEY_READ) }); + if (handles[1] != REG_SUCCESS) { + return null; + } + byte[] valb = (byte[]) regQueryValueEx.invoke(root, new Object[] { + new Integer(handles[0]), toCstr(value) }); + regCloseKey.invoke(root, new Object[] { new Integer(handles[0]) }); + return (valb != null ? new String(valb).trim() : null); + } + + private static Map<String,String> readStringValues + (Preferences root, int hkey, String key) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + HashMap<String, String> results = new HashMap<String,String>(); + int[] handles = (int[]) regOpenKey.invoke(root, new Object[] { + new Integer(hkey), toCstr(key), new Integer(KEY_READ) }); + if (handles[1] != REG_SUCCESS) { + return null; + } + int[] info = (int[]) regQueryInfoKey.invoke(root, + new Object[] { new Integer(handles[0]) }); + + int count = info[2]; // count + int maxlen = info[3]; // value length max + for(int index=0; index<count; index++) { + byte[] name = (byte[]) regEnumValue.invoke(root, new Object[] { + new Integer + (handles[0]), new Integer(index), new Integer(maxlen + 1)}); + String value = readString(hkey, key, new String(name)); + results.put(new String(name).trim(), value); + } + regCloseKey.invoke(root, new Object[] { new Integer(handles[0]) }); + return results; + } + + private static List<String> readStringSubKeys + (Preferences root, int hkey, String key) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + List<String> results = new ArrayList<String>(); + int[] handles = (int[]) regOpenKey.invoke(root, new Object[] { + new Integer(hkey), toCstr(key), new Integer(KEY_READ) + }); + if (handles[1] != REG_SUCCESS) { + return null; + } + int[] info = (int[]) regQueryInfoKey.invoke(root, + new Object[] { new Integer(handles[0]) }); + + int count = info[2]; // count + int maxlen = info[3]; // value length max + for(int index=0; index<count; index++) { + byte[] name = (byte[]) regEnumKeyEx.invoke(root, new Object[] { + new Integer + (handles[0]), new Integer(index), new Integer(maxlen + 1) + }); + results.add(new String(name).trim()); + } + regCloseKey.invoke(root, new Object[] { new Integer(handles[0]) }); + return results; + } + + private static int [] createKey(Preferences root, int hkey, String key) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + return (int[]) regCreateKeyEx.invoke(root, + new Object[] { new Integer(hkey), toCstr(key) }); + } + + private static void writeStringValue + (Preferences root, int hkey, String key, String valueName, String value) + throws IllegalArgumentException, IllegalAccessException, + InvocationTargetException + { + int[] handles = (int[]) regOpenKey.invoke(root, new Object[] { + new Integer(hkey), toCstr(key), new Integer(KEY_ALL_ACCESS) }); + + regSetValueEx.invoke(root, + new Object[] { + new Integer(handles[0]), toCstr(valueName), toCstr(value) + }); + regCloseKey.invoke(root, new Object[] { new Integer(handles[0]) }); + } + + // utility + private static byte[] toCstr(String str) { + byte[] result = new byte[str.length() + 1]; + + for (int i = 0; i < str.length(); i++) { + result[i] = (byte) str.charAt(i); + } + result[str.length()] = 0; + return result; + } +} +