Mercurial > repos > yufei-luo > s_mart

diff smart_toolShed/SMART/galaxy/restrictSequenceList.xml @ 0:e0f8dcca02ed

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/smart_toolShed/SMART/galaxy/restrictSequenceList.xml	Thu Jan 17 10:52:14 2013 -0500
@@ -0,0 +1,16 @@
+<tool id="restrictSequenceList" name="restrict sequence list">
+  <description>Keep the elements of a list of sequences whose name is mentionned in a given file.</description>
+  <command interpreter="python"> ../Java/Python/restrictSequenceList.py -i $inputFile -f fasta -n $name -o $outputFile </command>
+  
+  <inputs>
+	<param name="inputFile" type="data" label="Input fasta File" format="fasta"/>
+	<param name="name" type="data" label="The txt file contains the names of the transcripts." format="txt"/> 
+  </inputs>
+
+  <outputs>
+    <data format="fasta" name="outputFile" label="[restrictSequenceList] Output File"/>
+  </outputs>
+
+  <help>
+  </help>
+</tool>