Mercurial > repos > yufei-luo > s_mart
view commons/launcher/tests/Test_F_LaunchLastZ.py @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 (2013-04-30) |
parents | 94ab73e8a190 |
children |
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import unittest import os from commons.core.utils.FileUtils import FileUtils from commons.launcher.LaunchLastZ import LaunchLastZ class Test_F_LaunchLastZ(unittest.TestCase): def setUp(self): self._inFastaFileName = "%s/Tools/input_TestFLastZ.fa" % os.environ["REPET_DATA"] self._expAxtFileName = "%s/Tools/exp_TestFLastZ.axt" % os.environ["REPET_DATA"] self._obsAxtFileName = "obsLastZ.axt" def tearDown(self): try: os.remove(self._obsAxtFileName) except:pass def test_run(self): ilauncher = LaunchLastZ(self._inFastaFileName, self._inFastaFileName, self._obsAxtFileName,verbosity=1) ilauncher.run() self.assertTrue(FileUtils.are2FilesIdentical(self._expAxtFileName, self._obsAxtFileName)) def test_run_as_script(self): #FIXME : change path cmd = 'python %s/commons/launcher/LaunchLastZ.py -q %s -r %s -o %s' % (os.environ["REPET_PATH"], self._inFastaFileName, self._inFastaFileName, self._obsAxtFileName) os.system(cmd) self.assertTrue(FileUtils.are2FilesIdentical(self._expAxtFileName, self._obsAxtFileName)) if __name__ == "__main__": unittest.main()