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[up]
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drwxr-xr-x |
 test/
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drwxr-xr-x |
 CleanTranscriptFile.xml
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1951 |
-rwxr-xr-x |
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Clusterize.xml
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2760 |
-rwxr-xr-x |
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CollapseReads.xml
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1946 |
-rwxr-xr-x |
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CompareOverlappingSmallQuery.xml
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4697 |
-rwxr-xr-x |
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CompareOverlappingSmallRef.xml
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4759 |
-rwxr-xr-x |
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ConvertTranscriptFile.xml
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4041 |
-rwxr-xr-x |
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ConvertTranscriptFile_BedToCsv.xml
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559 |
-rwxr-xr-x |
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ConvertTranscriptFile_BedToGff2.xml
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564 |
-rwxr-xr-x |
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ConvertTranscriptFile_BedToGff3.xml
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566 |
-rwxr-xr-x |
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ConvertTranscriptFile_BedToSam.xml
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559 |
-rwxr-xr-x |
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ConvertTranscriptFile_BlastToCsv.xml
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589 |
-rwxr-xr-x |
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ConvertTranscriptFile_BlastToGff2.xml
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595 |
-rwxr-xr-x |
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ConvertTranscriptFile_BlastToGff3.xml
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596 |
-rwxr-xr-x |
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ConvertTranscriptFile_BlastToSam.xml
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589 |
-rwxr-xr-x |
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ConvertTranscriptFile_FastqToFasta.xml
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556 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff2ToCsv.xml
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565 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff2ToGff3.xml
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572 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff2ToSam.xml
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565 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff3ToCsv.xml
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566 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff3ToGff2.xml
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572 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff3ToSam.xml
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566 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff3ToWig.xml
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565 |
-rwxr-xr-x |
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ConvertTranscriptFile_SamToCsv.xml
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559 |
-rwxr-xr-x |
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ConvertTranscriptFile_SamToGff2.xml
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565 |
-rwxr-xr-x |
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ConvertTranscriptFile_SamToGff3.xml
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566 |
-rwxr-xr-x |
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CountReadGCPercent.xml
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615 |
-rwxr-xr-x |
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DiffExpAnal.xml
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1193 |
-rwxr-xr-x |
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FindOverlaps_optim.xml
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503 |
-rwxr-xr-x |
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GetDifferentialExpression.xml
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7149 |
-rwxr-xr-x |
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GetFlanking.xml
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5259 |
-rwxr-xr-x |
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SelectByTag.xml
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3750 |
-rwxr-xr-x |
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WrappGetLetterDistribution.py
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3627 |
-rwxr-xr-x |
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WrappGetLetterDistribution.xml
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1408 |
-rwxr-xr-x |
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__init__.py
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0 |
-rwxr-xr-x |
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changeGffFeatures.xml
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824 |
-rwxr-xr-x |
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changeTagName.xml
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1655 |
-rwxr-xr-x |
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cleanGff.xml
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681 |
-rwxr-xr-x |
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clusterize.xml
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2619 |
-rwxr-xr-x |
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clusterizeBySlidingWindows.xml
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4865 |
-rwxr-xr-x |
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compareOverlapping.xml
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9579 |
-rwxr-xr-x |
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computeCoverage.xml
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3552 |
-rwxr-xr-x |
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coordinatesToSequence.xml
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1986 |
-rwxr-xr-x |
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findTss.xml
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2189 |
-rwxr-xr-x |
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getDifference.xml
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4093 |
-rwxr-xr-x |
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getDistance.xml
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9339 |
-rwxr-xr-x |
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getDistribution.xml
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7178 |
-rwxr-xr-x |
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getExons.xml
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2318 |
-rwxr-xr-x |
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getIntrons.xml
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1827 |
-rwxr-xr-x |
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getNb.xml
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2512 |
-rwxr-xr-x |
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getReadDistribution.xml
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2173 |
-rwxr-xr-x |
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getSequence.xml
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578 |
-rwxr-xr-x |
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getSizes.xml
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4295 |
-rwxr-xr-x |
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getWigData.xml
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971 |
-rwxr-xr-x |
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getWigDistance.xml
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1053 |
-rwxr-xr-x |
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getWigProfile.xml
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2322 |
-rwxr-xr-x |
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mapperAnalyzer.xml
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5852 |
-rwxr-xr-x |
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mappingToCoordinates.xml
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1834 |
-rwxr-xr-x |
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mergeSlidingWindowsClusters.xml
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3346 |
-rwxr-xr-x |
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mergeTranscriptLists.xml
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4726 |
-rwxr-xr-x |
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modifyFasta.xml
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1298 |
-rwxr-xr-x |
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modifyGenomicCoordinates.xml
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3641 |
-rwxr-xr-x |
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modifySequenceList.xml
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1269 |
-rwxr-xr-x |
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plot.xml
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2608 |
-rwxr-xr-x |
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plotCoverage.xml
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8034 |
-rwxr-xr-x |
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plotGenomeCoverage.xml
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1936 |
-rwxr-xr-x |
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plotRepartition.xml
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1987 |
-rwxr-xr-x |
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plotTranscriptList.xml
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4253 |
-rwxr-xr-x |
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qualToFastq.xml
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580 |
-rwxr-xr-x |
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removeExonLines.sh
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29 |
-rwxr-xr-x |
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removeExonLines.xml
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501 |
-rwxr-xr-x |
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restrictFromSize.xml
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2918 |
-rwxr-xr-x |
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restrictSequenceList.xml
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660 |
-rwxr-xr-x |
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restrictTranscriptList.xml
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3175 |
-rwxr-xr-x |
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testArgum.xml
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957 |
-rwxr-xr-x |
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testR.xml
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1201 |
-rwxr-xr-x |
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trimAdaptor.xml
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1296 |
-rwxr-xr-x |
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trimSequences.xml
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2543 |
-rwxr-xr-x |
