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[up]
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drwxr-xr-x |
 CleanTranscriptFile.xml
|
2642 |
-rwxr-xr-x |
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Clusterize.xml
|
2996 |
-rwxr-xr-x |
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CollapseReads.xml
|
2372 |
-rwxr-xr-x |
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CompareOverlappingSmallQuery.xml
|
8130 |
-rwxr-xr-x |
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CompareOverlappingSmallRef.xml
|
8135 |
-rwxr-xr-x |
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ConvertTranscriptFile.xml
|
3287 |
-rwxr-xr-x |
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ConvertTranscriptFile_BedToCsv.xml
|
559 |
-rwxr-xr-x |
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ConvertTranscriptFile_BedToGff2.xml
|
564 |
-rwxr-xr-x |
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ConvertTranscriptFile_BedToGff3.xml
|
566 |
-rwxr-xr-x |
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ConvertTranscriptFile_BedToSam.xml
|
559 |
-rwxr-xr-x |
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ConvertTranscriptFile_BlastToCsv.xml
|
589 |
-rwxr-xr-x |
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ConvertTranscriptFile_BlastToGff2.xml
|
595 |
-rwxr-xr-x |
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ConvertTranscriptFile_BlastToGff3.xml
|
596 |
-rwxr-xr-x |
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ConvertTranscriptFile_BlastToSam.xml
|
589 |
-rwxr-xr-x |
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ConvertTranscriptFile_FastqToFasta.xml
|
556 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff2ToCsv.xml
|
565 |
-rwxr-xr-x |
|
ConvertTranscriptFile_Gff2ToGff3.xml
|
572 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff2ToSam.xml
|
565 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff3ToCsv.xml
|
566 |
-rwxr-xr-x |
|
ConvertTranscriptFile_Gff3ToGff2.xml
|
572 |
-rwxr-xr-x |
|
ConvertTranscriptFile_Gff3ToSam.xml
|
566 |
-rwxr-xr-x |
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ConvertTranscriptFile_Gff3ToWig.xml
|
565 |
-rwxr-xr-x |
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ConvertTranscriptFile_SamToCsv.xml
|
559 |
-rwxr-xr-x |
|
ConvertTranscriptFile_SamToGff2.xml
|
565 |
-rwxr-xr-x |
|
ConvertTranscriptFile_SamToGff3.xml
|
566 |
-rwxr-xr-x |
|
CountReadGCPercent.xml
|
646 |
-rwxr-xr-x |
|
DiffExpAnal.xml
|
1193 |
-rwxr-xr-x |
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FindOverlaps_optim.xml
|
503 |
-rwxr-xr-x |
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GetDifferentialExpression.xml
|
8923 |
-rwxr-xr-x |
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GetFlanking.xml
|
6016 |
-rwxr-xr-x |
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SelectByTag.xml
|
4107 |
-rwxr-xr-x |
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WrappGetLetterDistribution.xml
|
2487 |
-rwxr-xr-x |
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changeGffFeatures.xml
|
885 |
-rwxr-xr-x |
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changeTagName.xml
|
1539 |
-rwxr-xr-x |
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cleanGff.xml
|
1049 |
-rwxr-xr-x |
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clusterize.xml
|
2066 |
-rwxr-xr-x |
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clusterizeBySlidingWindows.xml
|
5728 |
-rwxr-xr-x |
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compareOverlapping.xml
|
11416 |
-rwxr-xr-x |
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computeCoverage.xml
|
3766 |
-rwxr-xr-x |
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coordinatesToSequence.xml
|
2273 |
-rwxr-xr-x |
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findTss.xml
|
2189 |
-rwxr-xr-x |
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getDifference.xml
|
4459 |
-rwxr-xr-x |
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getDistance.xml
|
9164 |
-rwxr-xr-x |
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getDistribution.xml
|
7537 |
-rwxr-xr-x |
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getExons.xml
|
2633 |
-rwxr-xr-x |
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getIntrons.xml
|
2110 |
-rwxr-xr-x |
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getNb.xml
|
2512 |
-rwxr-xr-x |
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getReadDistribution.xml
|
2173 |
-rwxr-xr-x |
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getSequence.xml
|
578 |
-rwxr-xr-x |
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getSizes.xml
|
4320 |
-rwxr-xr-x |
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getWigData.xml
|
1467 |
-rwxr-xr-x |
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getWigDistance.xml
|
1609 |
-rwxr-xr-x |
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getWigProfile.xml
|
3519 |
-rwxr-xr-x |
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mapperAnalyzer.xml
|
7226 |
-rwxr-xr-x |
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mappingToCoordinates.xml
|
1834 |
-rwxr-xr-x |
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mergeSlidingWindowsClusters.xml
|
3768 |
-rwxr-xr-x |
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mergeTranscriptLists.xml
|
5103 |
-rwxr-xr-x |
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modifyFasta.xml
|
1298 |
-rwxr-xr-x |
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modifyGenomicCoordinates.xml
|
4142 |
-rwxr-xr-x |
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modifySequenceList.xml
|
1453 |
-rwxr-xr-x |
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plot.xml
|
2608 |
-rwxr-xr-x |
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plotCoverage.xml
|
8840 |
-rwxr-xr-x |
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plotGenomeCoverage.xml
|
1936 |
-rwxr-xr-x |
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plotRepartition.xml
|
1987 |
-rwxr-xr-x |
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plotTranscriptList.xml
|
4839 |
-rwxr-xr-x |
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qualToFastq.xml
|
580 |
-rwxr-xr-x |
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removeExonLines.xml
|
501 |
-rwxr-xr-x |
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restrictFromSize.xml
|
3137 |
-rwxr-xr-x |
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restrictSequenceList.xml
|
660 |
-rwxr-xr-x |
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restrictTranscriptList.xml
|
3647 |
-rwxr-xr-x |
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testArgum.xml
|
957 |
-rwxr-xr-x |
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testR.xml
|
1201 |
-rwxr-xr-x |
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trimAdaptor.xml
|
1612 |
-rwxr-xr-x |
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trimSequences.xml
|
2921 |
-rwxr-xr-x |
