<tool id="listInputs" name="listInputs">
	<description>Give a list of input files from different conditions/groups for DESeq analysis, DESeq can then charge these input files from the given list.</description>
	<command interpreter="perl"> listInputs.pl $inputFromGroup1 $inputFromGroup2 $output
	</command>

	<inputs>
		<param name="inputFromGroup1" type="data" format="tabular" label="Please choose your file from group1."/>
		<param name="inputFromGroup2" type="data" format="tabular" label="Please choose your file from group2."/>		
	</inputs>

	<outputs>
		<data format="txt" name="output" label="listInputs Output"/>
	</outputs>

	<help>
		This tool can facilate the the chargement for DESeq tool.
		Example:
		From group1, we have input1.
		From group2, we have input2.
		This tool will give us a list like:
		fileID=1	input1	group1
		fileID=2	input2	group2
		Where the value of fileID is unique for each input file. 
	</help>
</tool>