Mercurial > repos > abaizan > kodoja

diff test-data/testData_2.fasta @ 0:18fe33eb7775 draft

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Uploaded kodoja_search.py v0.0.3 wrapper. https://github.com/abaizan/kodoja_galaxy/commit/55004d41a9c0750b2543f394594ee58cc4426609
author peterjc
date Wed, 14 Mar 2018 12:46:57 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/testData_2.fasta	Wed Mar 14 12:46:57 2018 -0400
@@ -0,0 +1,200 @@
+>SRR3466597.2160184/2
+TACAGTCATGACTAGTGGATTCGCTTTACACCATTTTGCACGAAACATAGCTGAGGTAAAAACATACGATTTTGTCATAATTGATGAATGTCATGTGAAT
+>SRR3466597.1867187/2
+GATTACGTTACAACCTTTGATGACAATATGACAATCAACCTCGAGTTGAATATGGATGAACTCCACAAGACGAGCCTTCCTGGAGT
+>SRR3466597.1714296/2
+AGCTCTTGAAATTTGGGCGAAAGCCTTTAATCATGAAAAACACCGTAGATTGCGGCGGACATATAGACTT
+>SRR3466597.979054/2
+CCAAACTTGGAGCATAGTGCGCAAACGCCATATGCAGGTGGAGATCATTAGCAAGAAGAGCGTCCGAGCGAGGGTCAAGAGATTTGAGGGCTCGGTGCA
+>SRR3466597.1842453/2
+TGTGACAACCAACTTCCAAACTAAGAGCATGTCTAGCATGGTGTCAGACACTAGTTGCACATTCCCTTCATCTGATGGCATATTCTGGAAGCATTGGATT
+>SRR3466597.1967334/2
+GCTACTCTTACCTTTCTTGCACCACCATTTACGGCTCTTGAGATGGTTCCCTTCAGGAGTTCCAAGTGGAACTTGAAAAGCGATTTC
+>SRR3466597.881543/2
+GTCAAAAGCCATTAATACAAGTGTGATGAAAGCTATAATCTTTTCAAAGTATGCTATCTCCGGTTGTTTTGCCTGTTCAACGAGG
+>SRR3466597.2337588/2
+CTTCATTCACTCCATAGGCTGTCATCACTGCCTGATGCCACGCGGCAAACTGCTCATGTGTGGCTCG
+>SRR3466597.864405/2
+CTTCCCAACTTTGAGGATGAGAGGGAAGTCAACTTTTGGGTCAT
+>SRR3466597.1545177/2
+TTTCACTAGCATATTTTAGAATGTCCTTGAGGAACGCCTCTCTATTAAGTCGACTTGGCTTATATGCTCCCATCATCGGTTTAAAATATGCTTCCTTTTC
+>SRR3466597.1972168/2
+TTCATAAACATGTATGGGTTTGATCCAACTGATTTTTCATACATTAGGTTTGTGGATCCATTGACAGGTCACACTATTGATGAGTCCACAAA
+>SRR3466597.431651/2
+CACACACTATTAGGGGTCCGCCAGTGATAGTTTCTGCGTGTCTTTGCTTTCCGCTTTTAAGCTTATTGTAATATATATGAATAGCTATTCACAGTGGGAC
+>SRR3466597.1360962/2
+GAATGGCAATCAATAGGTCATCGCCATTGACGTAATACACAATCTCTTCCTTGTTGATTCCACACTTCTCACATGTGTATAACATTGCAATAATGACCAT
+>SRR3466597.1276425/2
+CTTCCAGACGCTCAGGCAACAAATTCAAGGCGAAACTATTGAGCGTAAAGAAATTGGGAATCACTGCATTTCAATGCGGAATGGTAATTACGTG
+>SRR3466597.833605/2
+CGCACTACATAGGAGAATTAGACCGAGGTGACCTCACTTTGTCGTTCGCCTAAGTAATGAGACTAATAAGACATATTAAAACATATAAGATACCATTCAA
+>SRR3466597.1371609/2
+AAGTTAATTCGTCCCATGCATCCTTCAAAGCCTTTACATAGTTTTTTTCCAACATTTCATGCACCTTTTCAGAGGTCACAGCATAGCCACCTTCCCTCAA
+>SRR3466597.2181878/2
+ATTAGTTGCGACTATGAAATGCTTTTTCACTGAAGTACCTTCAGTGATTATTTCAGTTCCTCCACTCTTCATTGTTCTTCCATCAATCTTCGACACTTTG
+>SRR3466597.899074/2
+CTGTGAATAACAAGAGGAACAGGAGAAGGAAAGTGGCCAAAACGTACGTGGGGCGTGATTCCATTGTTGAGAAGATTGTA
+>SRR3466597.1751537/2
+TTCAGGAACATTCTCAGTTCCACGAATAAATGCTATGGCCACAAAACTTCAATATCCAAG
+>SRR3466597.2102827/2
+CACAGACAAAGCTATTATGATGTCCCTAGTGATTTGGCTTTTATTCCAGTGACTTTTAAGCTTCAGATGCTTAGCCACTTCGCTATCTGATTGGAGATAG
+>SRR3466597.847861/2
+ATAGGATTTTCAAGCTTAGAATACTGGAAAGTTCTATTGATGATATTGTCCCACTCGCTCTCTTTCTGCAACTGTGCAGCAACCTTCGCCTCTCGGTGTG
+>SRR3466597.1902260/2
+TACTGTTTGAACATGAATTTGAAGGAAAAGTCCTCAAAGTGTCAGCCACACCACCAGG
+>SRR3466597.966077/2
+AAACTTGGTGAAGTCCTTTGCATCCTCTTCCTTGACATTCACTAG
+>SRR3466597.29276/2
+TCATTACAAACAAGCACTTGTTTAGAAGAAATAATGGAACACTGTTGGTCCAATCACTACATGGTGTATTCAAGGTCAAGAACACCACGACTTTGCAACA
+>SRR3466597.1001991/2
+TTCTAACCTTTCCAAACTCATGCTGCACTAAATCAATAGGTGCGTTTGTGGACTCATCAATAGTGTGACCTGTCAATGGATCCACAAACCTAATGTATGA
+>ERR996011.39031/2
+GTACAAATTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGT
+>ERR996011.157056/2
+ATTAATTGATGGTAACTTAATGATTGTTGGTTATGTTAATCGCGAGGTTTATCATAATCACGTCATCAAAG
+>ERR996011.182572/2
+CCTTCTCCTCAATATAATCACTGGCACATTGTGATTCAAGATATTCTGCTGAATGAGGATTCTCACTGAAAAACCGAAC
+>ERR996011.250248/2
+CAAGAAATTATGTCTCGCGAGCTCATCAAACATCAGTACGGAGAGTTATTTTCTTGGCGCGAACGTTTGTGTTTGAAACTAGGTATAGGTTCATCAAATCTCTATACGTACTGGGTGGAACGCGAG
+>ERR996011.278646/2
+CTCACGTCATGTGCAAGAAGTTCAAATTCCGTGGTACTGCTCGGACATGAGTGATGACTTTATCGTTAAGTTAGCTGAGTGTGTC
+>ERR996011.296484/2
+CCAATGTACAAATTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGG
+>ERR996011.304884/2
+TGAGTGGAATTCCGTGGCAAGAGTATCAACGTTTTTCCCTATGACAAAAGCGATTAATACCATCACGGTGCAAGCGAATGAAGGTGAAGAATTAATTGATGGTAACTTAATGATTGTTGGTTATGTTAATCGCGAGGTTTATCATAATCACGTCATCAAAGGGAAGAGAGAG
+>ERR996011.319320/2
+TTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGTAAGGCATTTGTGATAAAAGCTGCTAGAAATGCTGG
+>ERR996011.335413/2
+CAAGAAATTATGTCTCGCGAGCTCATCAAACATCAGTACGGAGAGTTATTTTCTTGGCGCGAACGTTTGTGTTTGAAACTAGGTATAGGTTCATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGGAATAGAG
+>ERR996011.340106/2
+CTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGGAATAGAGATGTTGATAAATTG
+>ERR996011.354526/2
+GGTCAGTTAGGAGTGTTACACAGAGGCAAGCTTTGACAGCATCCATGTTTGAAGCGAATTATATATTCACAGCTCACTTGGTAGATAAACAAGGTTTCATGCCGA
+>ERR996011.433744/2
+CTCACGTCATGTGCAAGAAGTTCAAATTCCGTGGTACTGCTCGGACATGAGTGATGACTTTATCGTTAAGTTAGCTGAG
+>ERR996011.436007/2
+GAGGAATTGATGATTATGAATCTCTTGTTCGGTTTTTCAGTGAGAATCCTCATTCAGCAGAATATCTTGAATCACAATGTGCCAGTGATTATATTGAG
+>ERR996011.526546/2
+CAAGAAATTATGTCTCGCGAGCTCATCAAACATCAGTACGGAGAGTTATTTTCTTGGCGCGAACGTTTGTGTTTGAAACTAGGTATAGGTTCATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGG
+>ERR996011.586857/2
+CATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAA
+>ERR996011.605463/2
+TGTACAAATTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGTAAGGCATTTGTGATAAAAGCTGCTAGAAATGCTGGATACACAAGTATTGAAAAT
+>ERR996011.625574/2
+CTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGGAATAGAGATGTTGATAAATTG
+>ERR996011.805567/2
+GTTACATTTGTGACAGGAAATTTGGGAAAATTAGCAGAAGTGAAGCC
+>ERR996011.840514/2
+GAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGTAAGGCATTTGTGATAAAAGCTGCTAGAAATGCTGGATACACAAG
+>ERR996011.904946/2
+ATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGGAATAGAGATGTTGATAAATTGGGTCTCAGAAGTGTGTAAGAG
+>ERR996011.940698/2
+CCTATGACAAAAGCGATTAATACCATCACGGTGCAAGCGAATGAAGGTGAAGAATTAATTGATGGTAACTTAATGATTGTTGGTTATGTTAATCGCGAGGTTTATCATAATCACGTCATCAAAGGGAAGAGAGAG
+>ERR996011.972900/2
+AAATTATGTCTCGCGAGCTCATCAAACATCAGTACGGAGAGTTATTTTCTTGGCGCGAACGTTTGTGTTTGAAACTAGGTATAGGTTCATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGG
+>ERR996011.1057660/2
+TGATGATTATGAATCTCTTGTTCGGTTTTTCAGTGAGAATCCTCATTCAGCAGAATATCTTGAATCACAATGTGCCAGTGATTATATTGAGG
+>ERR996011.1202493/2
+CGATAACTCACGTCATGTGCAAGAAGTTCAAATTCCGTGGTACTGCTCGGACATGAGTGATGACTTTATCGTTAAGTTAGCTGAG
+>ERR996011.1221866/2
+GCCCCACAAGTTGAGCGTGTAAATGAGTTACTTCAGAAACTGAAAGATGAAGGATTGCAAACAAAGAAGAG
+>ERR996011.1225250/2
+TGAATCTCTTGTTCGGTTTTTCAGTGAGAATCCTCATTCAGCAGAATATCTTGAATCACAATGTGC
+>ERR996011.1248576/2
+TGGAAATAATAGTGGACAACCTTCTACAGTTGTCGATAACACTATTATACTAATGATTGTTGTGGAATATTGCAAGGCTGTCATGGAAAGTGAAG
+>ERR996011.1254369/2
+CCAATGTACAAATTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGTAAGGCAT
+>ERR996011.1270424/2
+CTCACGTCATGTGCAAGAAGTTCAAATTCCGTGGTACTGCTCGGACATGAGTGATGACTTTATCGTTAAGTTAGCTGAGT
+>ERR996011.1371856/2
+GTTGGTTATGTTAATCGCGAGGTTTATCATAATCACGTCATCAAAGGGAAGAGAGAGA
+>ERR996013.13602/2
+ATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCT
+>ERR996013.32029/2
+CTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTT
+>ERR996013.75116/2
+GCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGTAAAACTATCCTCACTCTGGAAGGAAAGAGAAAGAGTGAAAC
+>ERR996013.134143/2
+GTCAAATAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCA
+>ERR996013.138713/2
+CAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGAT
+>ERR996013.173891/2
+CAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCAAAATTATC
+>ERR996013.193314/2
+GCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTGTAAAGATGGAGTACGTTG
+>ERR996013.194974/2
+GCCACGTCCAGTGTTTGAGTTGATGAAGAACTTGTTGTTGCATACAGATGCTGTCGGTATATGTAGCACATACTTAGCCACGAACATGAGTGAGTGGAG
+>ERR996013.198787/2
+TGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGC
+>ERR996013.236824/2
+ATTTGTGTTCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCG
+>ERR996013.351799/2
+GCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAAT
+>ERR996013.372913/2
+CTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGC
+>ERR996013.376059/2
+GATCATTGATAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATTTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTCAATCAACATTGGTTTCGATTCTGCAAAACTATCCTCACTCTGGA
+>ERR996013.453686/2
+TTCTGTGCTAATTTGTGTTCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGC
+>ERR996013.484483/2
+GTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCAAAATTATCC
+>ERR996013.489616/2
+GCTAATTTGTGTTCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGG
+>ERR996013.497754/2
+CGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCGTGTGCGTACAGGA
+>ERR996013.515914/2
+GTGGAGAGCTGTTGAGCTAAATGCGCAGGGTGAGGATATTGATGATTCAGAATACCCTATGGAACCAATGTACAAATTTGCTCTCCCG
+>ERR996013.518430/2
+GCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCA
+>ERR996013.656197/2
+CTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAG
+>ERR996013.656523/2
+GTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATA
+>ERR996013.692538/2
+AAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATC
+>ERR996013.696477/2
+TGTGTTCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCGTGTGCGTACAGG
+>ERR996013.738638/2
+GTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCAAAATTATCC
+>ERR996013.747299/2
+GACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGC
+>ERR996013.752745/2
+TCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCGTGTGCGTACAGGATCAAAACCAATAACA
+>ERR996013.756913/2
+AAATCGTGGAGAGCTGTTGAGCTAAATGCGCAGGGTGAGGATATTGATGATTCAGAATACCCTATGGAACCAATGTACAAATTTGCTCTCCCAACAATGAGGAAAATAATGAGAAATTTTTCCAGCCAAG
+>ERR996013.793496/2
+AAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTG
+>ERR996013.804840/2
+TGATGATTCAGAATACCCTATGGAACCAATGTACAAATTTGCTCTCCCAACAATGAGGAAAATAATGAGAAATTTTTCCAGCCAAG
+>ERR996013.860827/2
+CACTCTTTGGCTCTATGCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTG
+>ERR996013.909965/2
+GTCAAATAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAAT
+>ERR996013.937909/2
+ATAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGC
+>ERR996013.947899/2
+CTTTGGCTCTATGCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTGTAAAGATGGAG
+>ERR996013.967303/2
+TAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAG
+>ERR996013.994308/2
+TGGGAATTCAGGACCAGAGTGGGATCCAATGGAGATTTTGAGTGATCTCAACAAGAAAGCAGCGATGGGAGCATTGTATCAAGGTAG
+>ERR996013.1066941/2
+CTCTATGCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTGTAAAGATG
+>ERR996013.1134829/2
+AAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCA
+>ERR996013.1154101/2
+CTCTTTGGCTCTATGCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTG
+>ERR996013.1172801/2
+CAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCAA
+>ERR996013.1177982/2
+AAAGAGAGTTAGAAGCACAAGAAGTTATTTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTCAATCAACATTGGTTTCGATTCTGCAAAACTATCCTCACTCTGGAAGGAAAGGG
+>ERR996013.1222223/2
+AACTCATTGACAGGATCATTGATAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATTTCTCGCGAGCTCATCAAACATCAATACGGCG
+>ERR996013.1249443/2
+CATAATTCTGATGATTGTGGTTGAGTACTGTAGAGAAGTGATGGCACACGAAGGTATTGAAATGAAATATAAATACATGTGTAATG
+>ERR996013.1295292/2
+AATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGC
+>ERR996013.1301772/2
+CGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCGTGTGCGTACAGGATCAAAACCAATAACAATTATGAC
+>ERR996013.1308814/2
+AAATAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATA