Mercurial > repos > abaizan > kodoja

view test-data/testData_2.fasta @ 0:18fe33eb7775 draft

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Uploaded kodoja_search.py v0.0.3 wrapper. https://github.com/abaizan/kodoja_galaxy/commit/55004d41a9c0750b2543f394594ee58cc4426609
author peterjc
date Wed, 14 Mar 2018 12:46:57 -0400
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>SRR3466597.2160184/2
TACAGTCATGACTAGTGGATTCGCTTTACACCATTTTGCACGAAACATAGCTGAGGTAAAAACATACGATTTTGTCATAATTGATGAATGTCATGTGAAT
>SRR3466597.1867187/2
GATTACGTTACAACCTTTGATGACAATATGACAATCAACCTCGAGTTGAATATGGATGAACTCCACAAGACGAGCCTTCCTGGAGT
>SRR3466597.1714296/2
AGCTCTTGAAATTTGGGCGAAAGCCTTTAATCATGAAAAACACCGTAGATTGCGGCGGACATATAGACTT
>SRR3466597.979054/2
CCAAACTTGGAGCATAGTGCGCAAACGCCATATGCAGGTGGAGATCATTAGCAAGAAGAGCGTCCGAGCGAGGGTCAAGAGATTTGAGGGCTCGGTGCA
>SRR3466597.1842453/2
TGTGACAACCAACTTCCAAACTAAGAGCATGTCTAGCATGGTGTCAGACACTAGTTGCACATTCCCTTCATCTGATGGCATATTCTGGAAGCATTGGATT
>SRR3466597.1967334/2
GCTACTCTTACCTTTCTTGCACCACCATTTACGGCTCTTGAGATGGTTCCCTTCAGGAGTTCCAAGTGGAACTTGAAAAGCGATTTC
>SRR3466597.881543/2
GTCAAAAGCCATTAATACAAGTGTGATGAAAGCTATAATCTTTTCAAAGTATGCTATCTCCGGTTGTTTTGCCTGTTCAACGAGG
>SRR3466597.2337588/2
CTTCATTCACTCCATAGGCTGTCATCACTGCCTGATGCCACGCGGCAAACTGCTCATGTGTGGCTCG
>SRR3466597.864405/2
CTTCCCAACTTTGAGGATGAGAGGGAAGTCAACTTTTGGGTCAT
>SRR3466597.1545177/2
TTTCACTAGCATATTTTAGAATGTCCTTGAGGAACGCCTCTCTATTAAGTCGACTTGGCTTATATGCTCCCATCATCGGTTTAAAATATGCTTCCTTTTC
>SRR3466597.1972168/2
TTCATAAACATGTATGGGTTTGATCCAACTGATTTTTCATACATTAGGTTTGTGGATCCATTGACAGGTCACACTATTGATGAGTCCACAAA
>SRR3466597.431651/2
CACACACTATTAGGGGTCCGCCAGTGATAGTTTCTGCGTGTCTTTGCTTTCCGCTTTTAAGCTTATTGTAATATATATGAATAGCTATTCACAGTGGGAC
>SRR3466597.1360962/2
GAATGGCAATCAATAGGTCATCGCCATTGACGTAATACACAATCTCTTCCTTGTTGATTCCACACTTCTCACATGTGTATAACATTGCAATAATGACCAT
>SRR3466597.1276425/2
CTTCCAGACGCTCAGGCAACAAATTCAAGGCGAAACTATTGAGCGTAAAGAAATTGGGAATCACTGCATTTCAATGCGGAATGGTAATTACGTG
>SRR3466597.833605/2
CGCACTACATAGGAGAATTAGACCGAGGTGACCTCACTTTGTCGTTCGCCTAAGTAATGAGACTAATAAGACATATTAAAACATATAAGATACCATTCAA
>SRR3466597.1371609/2
AAGTTAATTCGTCCCATGCATCCTTCAAAGCCTTTACATAGTTTTTTTCCAACATTTCATGCACCTTTTCAGAGGTCACAGCATAGCCACCTTCCCTCAA
>SRR3466597.2181878/2
ATTAGTTGCGACTATGAAATGCTTTTTCACTGAAGTACCTTCAGTGATTATTTCAGTTCCTCCACTCTTCATTGTTCTTCCATCAATCTTCGACACTTTG
>SRR3466597.899074/2
CTGTGAATAACAAGAGGAACAGGAGAAGGAAAGTGGCCAAAACGTACGTGGGGCGTGATTCCATTGTTGAGAAGATTGTA
>SRR3466597.1751537/2
TTCAGGAACATTCTCAGTTCCACGAATAAATGCTATGGCCACAAAACTTCAATATCCAAG
>SRR3466597.2102827/2
CACAGACAAAGCTATTATGATGTCCCTAGTGATTTGGCTTTTATTCCAGTGACTTTTAAGCTTCAGATGCTTAGCCACTTCGCTATCTGATTGGAGATAG
>SRR3466597.847861/2
ATAGGATTTTCAAGCTTAGAATACTGGAAAGTTCTATTGATGATATTGTCCCACTCGCTCTCTTTCTGCAACTGTGCAGCAACCTTCGCCTCTCGGTGTG
>SRR3466597.1902260/2
TACTGTTTGAACATGAATTTGAAGGAAAAGTCCTCAAAGTGTCAGCCACACCACCAGG
>SRR3466597.966077/2
AAACTTGGTGAAGTCCTTTGCATCCTCTTCCTTGACATTCACTAG
>SRR3466597.29276/2
TCATTACAAACAAGCACTTGTTTAGAAGAAATAATGGAACACTGTTGGTCCAATCACTACATGGTGTATTCAAGGTCAAGAACACCACGACTTTGCAACA
>SRR3466597.1001991/2
TTCTAACCTTTCCAAACTCATGCTGCACTAAATCAATAGGTGCGTTTGTGGACTCATCAATAGTGTGACCTGTCAATGGATCCACAAACCTAATGTATGA
>ERR996011.39031/2
GTACAAATTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGT
>ERR996011.157056/2
ATTAATTGATGGTAACTTAATGATTGTTGGTTATGTTAATCGCGAGGTTTATCATAATCACGTCATCAAAG
>ERR996011.182572/2
CCTTCTCCTCAATATAATCACTGGCACATTGTGATTCAAGATATTCTGCTGAATGAGGATTCTCACTGAAAAACCGAAC
>ERR996011.250248/2
CAAGAAATTATGTCTCGCGAGCTCATCAAACATCAGTACGGAGAGTTATTTTCTTGGCGCGAACGTTTGTGTTTGAAACTAGGTATAGGTTCATCAAATCTCTATACGTACTGGGTGGAACGCGAG
>ERR996011.278646/2
CTCACGTCATGTGCAAGAAGTTCAAATTCCGTGGTACTGCTCGGACATGAGTGATGACTTTATCGTTAAGTTAGCTGAGTGTGTC
>ERR996011.296484/2
CCAATGTACAAATTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGG
>ERR996011.304884/2
TGAGTGGAATTCCGTGGCAAGAGTATCAACGTTTTTCCCTATGACAAAAGCGATTAATACCATCACGGTGCAAGCGAATGAAGGTGAAGAATTAATTGATGGTAACTTAATGATTGTTGGTTATGTTAATCGCGAGGTTTATCATAATCACGTCATCAAAGGGAAGAGAGAG
>ERR996011.319320/2
TTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGTAAGGCATTTGTGATAAAAGCTGCTAGAAATGCTGG
>ERR996011.335413/2
CAAGAAATTATGTCTCGCGAGCTCATCAAACATCAGTACGGAGAGTTATTTTCTTGGCGCGAACGTTTGTGTTTGAAACTAGGTATAGGTTCATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGGAATAGAG
>ERR996011.340106/2
CTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGGAATAGAGATGTTGATAAATTG
>ERR996011.354526/2
GGTCAGTTAGGAGTGTTACACAGAGGCAAGCTTTGACAGCATCCATGTTTGAAGCGAATTATATATTCACAGCTCACTTGGTAGATAAACAAGGTTTCATGCCGA
>ERR996011.433744/2
CTCACGTCATGTGCAAGAAGTTCAAATTCCGTGGTACTGCTCGGACATGAGTGATGACTTTATCGTTAAGTTAGCTGAG
>ERR996011.436007/2
GAGGAATTGATGATTATGAATCTCTTGTTCGGTTTTTCAGTGAGAATCCTCATTCAGCAGAATATCTTGAATCACAATGTGCCAGTGATTATATTGAG
>ERR996011.526546/2
CAAGAAATTATGTCTCGCGAGCTCATCAAACATCAGTACGGAGAGTTATTTTCTTGGCGCGAACGTTTGTGTTTGAAACTAGGTATAGGTTCATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGG
>ERR996011.586857/2
CATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAA
>ERR996011.605463/2
TGTACAAATTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGTAAGGCATTTGTGATAAAAGCTGCTAGAAATGCTGGATACACAAGTATTGAAAAT
>ERR996011.625574/2
CTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGGAATAGAGATGTTGATAAATTG
>ERR996011.805567/2
GTTACATTTGTGACAGGAAATTTGGGAAAATTAGCAGAAGTGAAGCC
>ERR996011.840514/2
GAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGTAAGGCATTTGTGATAAAAGCTGCTAGAAATGCTGGATACACAAG
>ERR996011.904946/2
ATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGGAATAGAGATGTTGATAAATTGGGTCTCAGAAGTGTGTAAGAG
>ERR996011.940698/2
CCTATGACAAAAGCGATTAATACCATCACGGTGCAAGCGAATGAAGGTGAAGAATTAATTGATGGTAACTTAATGATTGTTGGTTATGTTAATCGCGAGGTTTATCATAATCACGTCATCAAAGGGAAGAGAGAG
>ERR996011.972900/2
AAATTATGTCTCGCGAGCTCATCAAACATCAGTACGGAGAGTTATTTTCTTGGCGCGAACGTTTGTGTTTGAAACTAGGTATAGGTTCATCAAATCTCTATACGTACTGGGTGGAACGCGAGGAAAAACAATCAGAGAAATCGAGTGCAATCTCTTGCATCATTTCCAAACCGGG
>ERR996011.1057660/2
TGATGATTATGAATCTCTTGTTCGGTTTTTCAGTGAGAATCCTCATTCAGCAGAATATCTTGAATCACAATGTGCCAGTGATTATATTGAGG
>ERR996011.1202493/2
CGATAACTCACGTCATGTGCAAGAAGTTCAAATTCCGTGGTACTGCTCGGACATGAGTGATGACTTTATCGTTAAGTTAGCTGAG
>ERR996011.1221866/2
GCCCCACAAGTTGAGCGTGTAAATGAGTTACTTCAGAAACTGAAAGATGAAGGATTGCAAACAAAGAAGAG
>ERR996011.1225250/2
TGAATCTCTTGTTCGGTTTTTCAGTGAGAATCCTCATTCAGCAGAATATCTTGAATCACAATGTGC
>ERR996011.1248576/2
TGGAAATAATAGTGGACAACCTTCTACAGTTGTCGATAACACTATTATACTAATGATTGTTGTGGAATATTGCAAGGCTGTCATGGAAAGTGAAG
>ERR996011.1254369/2
CCAATGTACAAATTTGCATTGCCAACTATGAGGAAGGTTATGAGAAACTTCTCTAGCCAAGCTATCCTCATGTATCAGAATAGTGTTGCTGCAGGTAAGGCAT
>ERR996011.1270424/2
CTCACGTCATGTGCAAGAAGTTCAAATTCCGTGGTACTGCTCGGACATGAGTGATGACTTTATCGTTAAGTTAGCTGAGT
>ERR996011.1371856/2
GTTGGTTATGTTAATCGCGAGGTTTATCATAATCACGTCATCAAAGGGAAGAGAGAGA
>ERR996013.13602/2
ATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCT
>ERR996013.32029/2
CTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTT
>ERR996013.75116/2
GCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGTAAAACTATCCTCACTCTGGAAGGAAAGAGAAAGAGTGAAAC
>ERR996013.134143/2
GTCAAATAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCA
>ERR996013.138713/2
CAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGAT
>ERR996013.173891/2
CAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCAAAATTATC
>ERR996013.193314/2
GCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTGTAAAGATGGAGTACGTTG
>ERR996013.194974/2
GCCACGTCCAGTGTTTGAGTTGATGAAGAACTTGTTGTTGCATACAGATGCTGTCGGTATATGTAGCACATACTTAGCCACGAACATGAGTGAGTGGAG
>ERR996013.198787/2
TGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGC
>ERR996013.236824/2
ATTTGTGTTCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCG
>ERR996013.351799/2
GCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAAT
>ERR996013.372913/2
CTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGC
>ERR996013.376059/2
GATCATTGATAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATTTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTCAATCAACATTGGTTTCGATTCTGCAAAACTATCCTCACTCTGGA
>ERR996013.453686/2
TTCTGTGCTAATTTGTGTTCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGC
>ERR996013.484483/2
GTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCAAAATTATCC
>ERR996013.489616/2
GCTAATTTGTGTTCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGG
>ERR996013.497754/2
CGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCGTGTGCGTACAGGA
>ERR996013.515914/2
GTGGAGAGCTGTTGAGCTAAATGCGCAGGGTGAGGATATTGATGATTCAGAATACCCTATGGAACCAATGTACAAATTTGCTCTCCCG
>ERR996013.518430/2
GCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCA
>ERR996013.656197/2
CTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAG
>ERR996013.656523/2
GTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATA
>ERR996013.692538/2
AAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATC
>ERR996013.696477/2
TGTGTTCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCGTGTGCGTACAGG
>ERR996013.738638/2
GTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCAAAATTATCC
>ERR996013.747299/2
GACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGC
>ERR996013.752745/2
TCCTACGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCGTGTGCGTACAGGATCAAAACCAATAACA
>ERR996013.756913/2
AAATCGTGGAGAGCTGTTGAGCTAAATGCGCAGGGTGAGGATATTGATGATTCAGAATACCCTATGGAACCAATGTACAAATTTGCTCTCCCAACAATGAGGAAAATAATGAGAAATTTTTCCAGCCAAG
>ERR996013.793496/2
AAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTG
>ERR996013.804840/2
TGATGATTCAGAATACCCTATGGAACCAATGTACAAATTTGCTCTCCCAACAATGAGGAAAATAATGAGAAATTTTTCCAGCCAAG
>ERR996013.860827/2
CACTCTTTGGCTCTATGCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTG
>ERR996013.909965/2
GTCAAATAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAAT
>ERR996013.937909/2
ATAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGC
>ERR996013.947899/2
CTTTGGCTCTATGCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTGTAAAGATGGAG
>ERR996013.967303/2
TAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAG
>ERR996013.994308/2
TGGGAATTCAGGACCAGAGTGGGATCCAATGGAGATTTTGAGTGATCTCAACAAGAAAGCAGCGATGGGAGCATTGTATCAAGGTAG
>ERR996013.1066941/2
CTCTATGCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTGTAAAGATG
>ERR996013.1134829/2
AAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCA
>ERR996013.1154101/2
CTCTTTGGCTCTATGCGAAGAAGGCTAGATTTTACAAATATGTTGATCATATGATACTTAAAGGTAGCCCATTGGTTGACATACTTG
>ERR996013.1172801/2
CAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTTAATCAACATTGGTTTCGATTCTGCAA
>ERR996013.1177982/2
AAAGAGAGTTAGAAGCACAAGAAGTTATTTCTCGCGAGCTCATCAAACATCAATACGGCGATTTGTTTTCGCTGCGAGAGCGACTTTCAATCAACATTGGTTTCGATTCTGCAAAACTATCCTCACTCTGGAAGGAAAGGG
>ERR996013.1222223/2
AACTCATTGACAGGATCATTGATAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATTTCTCGCGAGCTCATCAAACATCAATACGGCG
>ERR996013.1249443/2
CATAATTCTGATGATTGTGGTTGAGTACTGTAGAGAAGTGATGGCACACGAAGGTATTGAAATGAAATATAAATACATGTGTAATG
>ERR996013.1295292/2
AATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATACGGC
>ERR996013.1301772/2
CGCGAGTGTTAGCAAACGCACTGCACGAGTCGTATATGGCTTTATACGGCTTTGATGTTTCGCTTGCATATCGTGGTCGTGTGCGTACAGGATCAAAACCAATAACAATTATGAC
>ERR996013.1308814/2
AAATAAATATGAACTCATTGACAGGATCATTGACAAAAAAAGAGAGTTAGAAGCACAAGAAGTTATCTCTCGCGAGCTCATCAAACATCAATA