Mercurial > repos > abims-sbr > cds_search

diff scripts/dico.py @ 0:eb95bf7f90ae draft

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
author abims-sbr
date Fri, 01 Feb 2019 10:26:37 -0500
parents
children c79bdda8abfb
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/scripts/dico.py	Fri Feb 01 10:26:37 2019 -0500
@@ -0,0 +1,13 @@
+import string, itertools
+
+def dico(F1):
+    dicoco = {}
+    with open(F1, "r") as file:
+        for name, query in itertools.izip_longest(*[file]*2):
+            if name[0] == ">":
+                fasta_name_query = name[:-1]
+                Sn = string.split(fasta_name_query, "||")
+                fasta_name_query = Sn[0]                
+                fasta_seq_query = query[:-1]
+                dicoco[fasta_name_query] = fasta_seq_query    
+    return(dicoco)