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annotate Tools/Matrix/matrix_generator.xml @ 3:b30ba2b06326 draft

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author amadeo
date Mon, 05 Sep 2016 06:01:48 -0400
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1 <tool id="matrix_generator" name="Gene-motif matrix" version="1.0.0">
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2 <description>Script to create csv formatted gene vs TF matrix from a filtered gff file. GFF file can contain just Positive or Just neagtive strand TFBS. Has two types of matrix produced: (0) resence/Abscence with only 1 and 0s. With option=0. (1) counts of TFs with numbers 1,3,5 etc. </description>
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3 <command interpreter="perl">gene-TF-matrix-csv-galaxy.pl $input $output $value </command>
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4 <inputs>
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5 <param format="gff" name="input" type="data" label="FIMO file"/>
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6 <param name="value" size="1" type="integer" value="0" label="Type of matrix"/>
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7 </inputs>
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8 <outputs>
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9 <data format="csv" name="output" label="Gene-Motif-matrix" />
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10 </outputs>
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11 </tool>