Mercurial > repos > amadeo > amadeo
comparison Tools/Matrix/matrix_generator.xml @ 3:b30ba2b06326 draft
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| author | amadeo |
|---|---|
| date | Mon, 05 Sep 2016 06:01:48 -0400 |
| parents | 229d36377838 |
| children |
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| 2:607d7bdfb07f | 3:b30ba2b06326 |
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| 1 <tool id="matrix_generator" name="Gene-motif matrix" version="1.0.0"> | |
| 2 <description>Script to create csv formatted gene vs TF matrix from a filtered gff file. GFF file can contain just Positive or Just neagtive strand TFBS. Has two types of matrix produced: (0) resence/Abscence with only 1 and 0s. With option=0. (1) counts of TFs with numbers 1,3,5 etc. </description> | |
| 3 <command interpreter="perl">gene-TF-matrix-csv-galaxy.pl $input $output $value </command> | |
| 4 <inputs> | |
| 5 <param format="gff" name="input" type="data" label="FIMO file"/> | |
| 6 <param name="value" size="1" type="integer" value="0" label="Type of matrix"/> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="csv" name="output" label="Gene-Motif-matrix" /> | |
| 10 </outputs> | |
| 11 </tool> |