Mercurial > repos > anmoljh > activity_files_merge

annotate merge_activity_files.xml @ 0:b06d2e06b740 draft

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planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
author anmoljh
date Thu, 31 May 2018 11:24:57 -0400
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children 0a71d32d6e51
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1 <tool id="merge_activity_files" name="Merge Activity files" version="1.0">
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2 <description>"Merge data files of Active and Inactive compounds"</description>
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3 <stdio>
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4 <exit_code range="1:" />
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5 </stdio>
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6 <command interpreter="perl">merge_activity_files.pl $Input1 $Activity1 $Input2 $Activity2 $Merged_file</command>
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7 <inputs>
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8 <param format="csv" name="Input1" type="data" label="Descriptor File 1" help="Upload Active/Inactive descriptor file in csv format"/>
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9 <param name="Activity1" type="text" value="Active" label="Select type of molecules" help="write something which defines data eg active,positive,inactive,negative,etc." >
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10 <validator type="empty_field" message="This field can't be left blank"/>
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11 </param>
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12 <param format="txt" name="Input2" type="data" label="Descriptor File 2" help="Upload Active/Inactive descriptor file in csv format"/>
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13 <param name="Activity2" type="text" value="Inactive" label="Select type of molecules" help="write something which defines data eg active,positive,inactive,negative,etc.">
b06d2e06b740 planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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14 <validator type="empty_field" message="This field can't be left blank"/>
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15 </param>
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16 </inputs>
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17 <outputs>
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18 <data format="csv" name="Merged_file" label="Merged Mega Descriptor File"/>
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="Input1" value="actives_with_names.csv" />
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23 <param name="Activity1" value="Active" />
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24 <param name="Input2" value="inactives_with_names.csv" />
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25 <param name="Activity2" value="Inactive" />
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26 <output name="Merged_file" file="merged.csv" compare="sim_size" delta="90000000" />
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27 </test>
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28 </tests>
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29 <help>Provide descriptor files of active/positive and inactive/negative molecules and assign them properly.</help>
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30 </tool>