Mercurial > repos > anmoljh > package_trinityrnaseq_r20140717

annotate tool_dependencies.xml @ 6:ae82c6c09b69

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few changes
author 'Anmol J. Hemrom' <anmol.jh@gmail.com>
date Thu, 03 Sep 2015 14:15:52 +0100
parents 03100f652146
children 484a0e253167
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="ncurses" version="5.9">
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4 <repository changeset_revision="93ce0192b9db" name="package_ncurses_5_9" owner="anmoljh" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="zlib" version="1.2.8">
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7 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="trinityrnaseq" version="r20140717">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">http://sourceforge.net/projects/trinityrnaseq/files/trinityrnaseq_r20140717.tar.gz</action>
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13 <action type="set_environment_for_install">
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14 <repository changeset_revision="93ce0192b9db" name="package_ncurses_5_9" owner="anmoljh" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
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15 <package name="ncurses" version="5.9" />
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16 </repository>
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17 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
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18 <package name="zlib" version="1.2.8" />
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19 </repository>
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20 </action>
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21 <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/' trinity-plugins/rsem/sam/Makefile</action>
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22 <action type="shell_command">make</action>
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23 <action type="move_directory_files">
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24 <source_directory>.</source_directory>
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25 <destination_directory>$INSTALL_DIR</destination_directory>
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26 </action>
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27 <action type="set_environment">
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28 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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29 </action>
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30 <action type="set_environment">
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31 <environment_variable name="TRINITY_HOME" action="set_to">$INSTALL_DIR</environment_variable>
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32 </action>
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33 </actions>
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34 </install>
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35 <readme>
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36 </readme>
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37 </package>
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38 </tool_dependency>