Mercurial > repos > anton > vcfcommonsamples
diff vcfcommonsamples.xml @ 0:6a1a90ea160f
Imported from capsule None
author | anton |
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date | Wed, 11 Jun 2014 17:12:01 -0400 |
parents | |
children | 239ddfe40290 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/vcfcommonsamples.xml Wed Jun 11 17:12:01 2014 -0400 @@ -0,0 +1,30 @@ +<tool id="vcfcommonsamples" name="VCFcommonSamples:" version="0.0.1"> +<requirements> + <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> +</requirements> + <description>Output records belonging to samples commong between two datasets</description> + <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command> + <inputs> + <param format="vcf" name="input1" type="data" label="First dataset"/> + <param format="vcf" name="input2" type="data" label="Second dataset"/> + </inputs> + <outputs> + <data format="vcf" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="input1" value="vcflib.vcf"/> + <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/> + <output name="out_file1" file="vcfcommonsamples-test1.vcf"/> + </test> + </tests> + <help> + +Outputs each record in the first file, removing samples not present in the second. + +---- + +Vcfcommonsamples is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib). + +</help> +</tool>