Mercurial > repos > anton > vcffixup

changeset 3:434227302729 draft default tip

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Uploaded
author anton
date Mon, 15 Sep 2014 14:51:23 -0400
parents 9f0d84b2deba
children
files tool_dependencies.xml vcffixup.xml
diffstat 2 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jun 25 16:48:10 2014 -0400
+++ b/tool_dependencies.xml	Mon Sep 15 14:51:23 2014 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="vcflib" version="86723982aa">
-      <repository changeset_revision="a6826babf644" name="vcflib_86723982aa" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <package name="vcflib" version="8a5602bf07">
+        <repository changeset_revision="bffe0495cd92" name="package_vcflib_8a5602bf07" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
--- a/vcffixup.xml	Wed Jun 25 16:48:10 2014 -0400
+++ b/vcffixup.xml	Mon Sep 15 14:51:23 2014 -0400
@@ -1,6 +1,6 @@
 <tool id="vcffixup" name="VCFfixup:" version="0.0.2">
 <requirements>
-    <requirement type="package" version="86723982aa">vcflib</requirement>
+    <requirement type="package" version="8a5602bf07">vcflib</requirement>
 </requirements>
   <description>Count the allele frequencies across alleles present in each record in the VCF file</description>
   <command>vcffixup "${input1}" > "${out_file1}"</command>
@@ -18,7 +18,7 @@
     </tests>
   <help>
 
-Uses genotypes from the VCF file to correct AC (alternate allele count), AF (alternate allele frequency), NS (number of called), in the VCF records.
+Uses genotypes from the selected VCF dataset to correct AC (alternate allele count), AF (alternate allele frequency), NS (number of called), in the VCF records.
 
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