Mercurial > repos > artbio > cherry_pick_fasta
annotate cherry_pick_fasta.xml @ 2:321cad0eb507 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit b5ef783237b244d684e26b1ed1cc333a8305ce3e"
author | artbio |
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date | Tue, 16 Mar 2021 23:25:57 +0000 |
parents | ea8fde9c6f82 |
children | c282a8a47dd9 |
rev | line source |
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2
321cad0eb507
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit b5ef783237b244d684e26b1ed1cc333a8305ce3e"
artbio
parents:
1
diff
changeset
|
1 <tool id="cherry_pick_fasta" name="Pick Fasta sequences" version="2.1.0"> |
1
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
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changeset
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2 <description>with header satisfying a string query</description> |
2
321cad0eb507
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit b5ef783237b244d684e26b1ed1cc333a8305ce3e"
artbio
parents:
1
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changeset
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3 <requirements> |
321cad0eb507
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit b5ef783237b244d684e26b1ed1cc333a8305ce3e"
artbio
parents:
1
diff
changeset
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4 <requirement type="package" version="3.7.6">python</requirement> |
321cad0eb507
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit b5ef783237b244d684e26b1ed1cc333a8305ce3e"
artbio
parents:
1
diff
changeset
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5 </requirements> |
0
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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6 <command interpreter="python">cherry_pick_fasta.py |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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7 --input $input |
1
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
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8 --searchfor '$search.searchfor' |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
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9 #if $search.options_selector == 'single': |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
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10 --query-string '$search.query' |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
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11 #else: |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
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12 --query-file '$search.query' |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
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13 #end if |
0
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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14 --output $output |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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15 </command> |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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16 |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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17 <inputs> |
1
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
18 <param name="input" type="data" format="fasta" label="Source file" help="Fasta file to parse" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
19 |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
20 <conditional name="search"> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
21 <param name="options_selector" type="select" display="radio" label="by single term or file of terms"> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
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changeset
|
22 <option value="single" selected="True">single term</option> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
23 <option value="textdataset">terms in a text dataset</option> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
24 </param> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
25 <when value="single"> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
26 <param name="query" type="text" size="30" value="" label="Search string" help="exemple: gi|40557596"> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
27 <sanitizer> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
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changeset
|
28 <valid initial="string.printable"> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
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changeset
|
29 <remove value="""/> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
30 <remove value="\"/> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
31 </valid> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
32 <mapping initial="none"> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
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changeset
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33 <add source=""" target="\""/> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
34 <add source="\" target="\\"/> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
35 </mapping> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
36 </sanitizer> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
37 </param> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
38 <param name="searchfor" type="select" label="retrieve sequences whose headers contain or do not contain the search string"> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
39 <option value="with" selected="true">contain</option> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
40 <option value="without">do not contain</option> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
41 </param> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
42 </when> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
43 <when value="textdataset"> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
44 <param name="query" type="data" format="txt" label="term dataset" help="a list of term to search for, one term per line" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
45 <param name="searchfor" type="select" label="retrieve sequences whose headers contain or do not contain the search list"> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
46 <option value="with" selected="true">contain</option> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
47 <option value="without">do not contain</option> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
48 </param> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
49 </when> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
50 </conditional> |
0
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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51 </inputs> |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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52 <outputs> |
1
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
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|
53 <data name="output" format="fasta" label="Fasta sequences ${search.searchfor.value} ${search.options_selector} term(s) in header" /> |
0
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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54 </outputs> |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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55 <tests> |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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56 <test> |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
|
57 <param ftype="fasta" name="input" value="input.fa" /> |
1
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
58 <!-- <param name="options_selector" value="textdataset" /> --> |
0
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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59 <param name="query" value="gi|81971654" /> |
1
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
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60 <param name="searchfor" value="with" /> |
0
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
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61 <output name="output" ftype="fasta" file="output.fa" /> |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
artbio
parents:
diff
changeset
|
62 </test> |
1
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
63 <test> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
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64 <param ftype="fasta" name="input" value="input.fa" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
65 <!-- <param name="options_selector" value="textdataset" /> --> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
66 <param name="query" value="RNA" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
67 <param name="searchfor" value="without" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
68 <output name="output" ftype="fasta" file="output_without.fa" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
69 </test> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
70 <test> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
71 <param ftype="fasta" name="input" value="input.fa" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
72 <param name="options_selector" value="textdataset" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
73 <param name="query" ftype="txt" value="termlist.txt" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
74 <param name="searchfor" value="without" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
parents:
0
diff
changeset
|
75 <output name="output" ftype="fasta" file="output_termlist.fa" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
artbio
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76 </test> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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77 <test> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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78 <param ftype="fasta" name="input" value="input.fa" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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79 <param name="options_selector" value="textdataset" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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80 <param name="query" ftype="txt" value="termlist.txt" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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81 <param name="searchfor" value="without" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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82 <output name="output" ftype="fasta" file="output_termlist_without.fa" /> |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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83 </test> |
0
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
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84 </tests> |
1
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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85 |
0
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
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86 <help> |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
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87 **What it does** |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
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88 |
1
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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89 This tool retrieves nucleotide/peptide sequences from a fasta file whose headers match |
ea8fde9c6f82
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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90 or do not match a given string. |
0
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
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91 |
1
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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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92 It is Copyright © 2019 `CNRS and Sorbonne-Université`_ and is released under the `MIT license`_. |
0
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
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93 |
1
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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29"
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94 .. _CNRS and Sorbonne-Université: http://www.sorbonne-universite.fr/en |
0
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
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95 .. _MIT license: http://opensource.org/licenses/MIT |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
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96 |
e3aee4ba49c6
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit a5e865d017e0434dae013565929ad5e6e5129fd3
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97 </help> |
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98 </tool> |