Mercurial > repos > artbio > cnv_facets
diff test-data/test_sample_01.cnv.vcf @ 4:3f62267c4be7 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
| author | artbio |
|---|---|
| date | Sun, 05 Oct 2025 18:42:30 +0000 |
| parents | |
| children | 1d56a6b5739f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_sample_01.cnv.vcf Sun Oct 05 18:42:30 2025 +0000 @@ -0,0 +1,14 @@ +##fileformat=VCFv4.2 +##fileDate=20251005 +##source=FACETS_v0.6.2 +##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant"> +##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant (standard VCF tags: DEL, DUP, CNV)"> +##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Length of the SV"> +##INFO=<ID=EVENT,Number=1,Type=String,Description="FACETS event classification. Possible values: DUP, HEMIZYG_DEL, HOMOZYG_DEL, CN_LOH"> +##INFO=<ID=TCN,Number=1,Type=Integer,Description="Total Copy Number (EM fit)"> +##INFO=<ID=LCN,Number=1,Type=Integer,Description="Lesser Copy Number (EM fit)"> +##INFO=<ID=NUM_MARK,Number=1,Type=Integer,Description="Number of SNPs in the segment"> +##INFO=<ID=NHET,Number=1,Type=Integer,Description="Number of heterozygous SNPs in the segment"> +##FACETS_PURITY=NA +##FACETS_PLOIDY=2 +#CHROM POS ID REF ALT QUAL FILTER INFO