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annotate test-data/test_sample_01.cnv.vcf @ 4:3f62267c4be7 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
author artbio
date Sun, 05 Oct 2025 18:42:30 +0000
parents
children 1d56a6b5739f
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4
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
diff changeset
1 ##fileformat=VCFv4.2
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
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2 ##fileDate=20251005
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
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3 ##source=FACETS_v0.6.2
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
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4 ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant">
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
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5 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant (standard VCF tags: DEL, DUP, CNV)">
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
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6 ##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Length of the SV">
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
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7 ##INFO=<ID=EVENT,Number=1,Type=String,Description="FACETS event classification. Possible values: DUP, HEMIZYG_DEL, HOMOZYG_DEL, CN_LOH">
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
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8 ##INFO=<ID=TCN,Number=1,Type=Integer,Description="Total Copy Number (EM fit)">
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
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9 ##INFO=<ID=LCN,Number=1,Type=Integer,Description="Lesser Copy Number (EM fit)">
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
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10 ##INFO=<ID=NUM_MARK,Number=1,Type=Integer,Description="Number of SNPs in the segment">
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
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11 ##INFO=<ID=NHET,Number=1,Type=Integer,Description="Number of heterozygous SNPs in the segment">
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
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12 ##FACETS_PURITY=NA
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
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13 ##FACETS_PLOIDY=2
3f62267c4be7 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/facets commit e47e0ed100904318ef4aae661b763e049c358edf
artbio
parents:
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14 #CHROM POS ID REF ALT QUAL FILTER INFO