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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/manta commit 569d2234f8a576d5c4fdae120a32418c50436ac2
author artbio
date Tue, 20 Feb 2024 08:31:27 +0000
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[manta]
referenceFasta = /dummy/path/to/genome.fa
enableRemoteReadRetrievalForInsertionsInGermlineCallingModes = 1
minPassSomaticScore = 30
minSomaticScore = 10
minCandidateVariantSize = 8
minPassDiploidVariantScore = 20
useOverlapPairEvidence = 0
minPassDiploidGTScore = 15
graphNodeMaxEdgeCount = 10
minEdgeObservations = 3
minDiploidVariantScore = 10
minCandidateSpanningCount = 3
enableRemoteReadRetrievalForInsertionsInCancerCallingModes = 0
rnaMinCandidateVariantSize = 1000
minScoredVariantSize = 50