Mercurial > repos > artbio > tarfast5

changeset 5:03034755a509 draft default tip

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/tarfast5 commit 617026dab446713793b40d5556aac16180e68eea"
author artbio
date Wed, 26 May 2021 23:13:58 +0000
parents 56b8caf469f3
children
files tarfast5.xml test-data/F1_filename_mapping.txt test-data/F2_filename_mapping.txt
diffstat 3 files changed, 5 insertions(+), 24 deletions(-) [+]
line wrap: on
line diff
--- a/tarfast5.xml	Sat May 22 12:35:41 2021 +0000
+++ b/tarfast5.xml	Wed May 26 23:13:58 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="tarfast5" name="tarfast5" version="0.6.0">
+<tool id="tarfast5" name="tarfast5" version="0.6.1">
   <description></description>
   <requirements>
         <requirement type="package" version="2.6">pigz</requirement>
@@ -53,12 +53,12 @@
 
 **What it does**
 
-Creates a tar.gz archive of fast5 (h5) sequences files
+Creates a fast5.tar or fast5.tar.gz archive of fast5 (h5) sequences files
 
 .. class:: warningmark
 
-This tools follows a "map-reduce" procedure: multiple inputs, that can be arranged as a data collection,
-are compressed into a single tar.gz archive.
+This tools follows a "map-reduce" procedure: multiple inputs arranged as a
+data collection are compressed into a single tar.gz archive.
  
 
 
@@ -69,15 +69,6 @@
 </help>
 
 <citations>
-    <citation type="doi">10.1093/bioinformatics/btp352</citation>
-     <citation type="bibtex">@Book{,
-    title = {Lattice: Multivariate Data Visualization with R},
-    author = {Deepayan Sarkar},
-    publisher = {Springer},
-    address = {New York},
-    year = {2008},
-    note = {ISBN 978-0-387-75968-5},
-    url = {http://lmdvr.r-forge.r-project.org},
-  }</citation>
+    <citation type="doi">10.11578/dc.20180330.1</citation>
 </citations>
 </tool>
--- a/test-data/F1_filename_mapping.txt	Sat May 22 12:35:41 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-02184968-3def-4785-bd81-0bff70a57da4	batch0.fast5
-0335884d-20f0-4b7f-8f1c-ef57cd739ce6	batch0.fast5
-03bd0764-2e1f-4d60-841b-9519ea9d39cb	batch0.fast5
-07b9016b-e5db-449f-b161-79f17eae34df	batch0.fast5
-02343944-ac7b-41ac-85b9-dd0b040bfd6c	batch0.fast5
--- a/test-data/F2_filename_mapping.txt	Sat May 22 12:35:41 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-03bd0764-2e1f-4d60-841b-9519ea9d39cb	batch0.fast5
-02343944-ac7b-41ac-85b9-dd0b040bfd6c	batch0.fast5
-02184968-3def-4785-bd81-0bff70a57da4	batch0.fast5
-07b9016b-e5db-449f-b161-79f17eae34df	batch0.fast5
-0335884d-20f0-4b7f-8f1c-ef57cd739ce6	batch0.fast5