Mercurial > repos > artbio > tarfast5

changeset 4:56b8caf469f3 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/tarfast5 commit 249d82b663920626adc7d5300ffef43c065c1205"
author artbio
date Sat, 22 May 2021 12:35:41 +0000
parents 75ae798e310b
children 03034755a509
files tarfast5.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/tarfast5.xml	Thu May 20 16:04:11 2021 +0000
+++ b/tarfast5.xml	Sat May 22 12:35:41 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="tarfast5" name="tarfast5" version="0.5.3">
+<tool id="tarfast5" name="tarfast5" version="0.6.0">
   <description></description>
   <requirements>
         <requirement type="package" version="2.6">pigz</requirement>
@@ -9,17 +9,17 @@
   </stdio>
   <command detect_errors="exit_code"><![CDATA[
         #for $file in $inputs:
-            ln -s $file ${file.element_identifier}.h5 &&
+            ln -s $file ${file.element_identifier}.fast5 &&
         #end for
         #if $output_format == "gzip":
             export PIGZ="-p \${GALAXY_SLOTS:-4}" &&
-            tar -cvh --use-compress-program=pigz -f $output *.h5
+            tar -cvh --use-compress-program=pigz -f $output *.fast5
         #else:
-            tar -cvh -f $output *.h5
+            tar -cvh -f $output *.fast5
         #end if
   ]]></command>
  <inputs>
-    <param name="inputs" type="data" format="h5" label="fast5 sequence files" multiple="true" />
+    <param name="inputs" type="data" format="h5,fast5.tar" label="fast5 sequence files" multiple="true" />
     <param name="output_format" type="select" label="compression of the tar archive" display="radio">
         <option value="tar">tar (no compression)</option>
         <option value="gzip" selected="true">tar.gz</option>