Mercurial > repos > bgruening > confab

annotate tool_dependencies.xml @ 3:039ef13e3676 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/confab commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
author bgruening
date Sun, 01 Nov 2015 10:34:34 -0500
parents 548537fc2577
children
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="eigen2" version="2.0.17">
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4 <repository changeset_revision="a270fba04f3a" name="package_eigen_2_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="confab" version="1.0.1">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://github.com/bgruening/confab/archive/1.0.1.tar.gz</action>
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11 <!-- populate the environment variables from the dependend repos -->
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12 <action type="set_environment_for_install">
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13 <repository changeset_revision="a270fba04f3a" name="package_eigen_2_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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14 <package name="eigen2" version="2.0.17" />
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15 </repository>
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16 </action>
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18 <action type="shell_command">cmake . -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN2_INCLUDE_DIR=$EIGEN2_SOURCE_PATH</action>
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19 <action type="shell_command">make</action>
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20 <action type="shell_command">make install</action>
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21 <action type="set_environment">
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22 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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23 <environment_variable action="set_to" name="BABEL_DATADIR">$INSTALL_DIR/share/openbabel</environment_variable>
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24 <environment_variable action="set_to" name="BABEL_LIBDIR">$INSTALL_DIR/lib/openbabel/2.2.99</environment_variable>
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25 </action>
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26 </actions>
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27 </install>
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28 <readme>Compiling Confab requires g++, CMake 2.4+. Optional but required for a few features is libxml2 and zlib.</readme>
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29 </package>
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30 </tool_dependency>