Mercurial > repos > bgruening > gfastats

annotate test-data/test_07_stats.tabular @ 0:5799092ffdff draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
author bgruening
date Wed, 09 Mar 2022 10:29:20 +0000
parents
children 2b8b4cacb83d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
1 +++Summary+++:
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
2 # scaffolds: 3
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
3 Total scaffold length: 419576
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
4 Average scaffold length: 139858.67
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
5 Scaffold N50: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
6 Scaffold auN: 415520.91
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
7 Scaffold L50: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
8 Largest scaffold: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
9 # contigs: 6
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
10 Total contig length: 419573
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
11 Average contig length: 69928.83
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
12 Contig N50: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
13 Contig auN: 414345.81
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
14 Contig L50: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
15 Largest contig: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
16 # gaps: 3
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
17 Total gap length: 3
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
18 Average gap length: 1.00
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
19 Gap N50: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
20 Gap auN: 1.00
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
21 Gap L50: 2
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
22 Largest gap: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
23 Base composition (ACGT): 102144, 112550, 104859, 100020
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
24 GC content %: 51.82
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
25 # soft-masked bases: 0
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
26 # paths: 3
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
27 Scaffold N10: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
28 Scaffold N20: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
29 Scaffold N30: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
30 Scaffold N40: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
31 Scaffold N50: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
32 Scaffold N60: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
33 Scaffold N70: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
34 Scaffold N80: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
35 Scaffold N90: 417540
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
36 Scaffold N100: 356
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
37 Scaffold L10: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
38 Scaffold L20: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
39 Scaffold L30: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
40 Scaffold L40: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
41 Scaffold L50: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
42 Scaffold L60: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
43 Scaffold L70: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
44 Scaffold L80: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
45 Scaffold L90: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
46 Scaffold L100: 3
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
47 Contig N10: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
48 Contig N20: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
49 Contig N30: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
50 Contig N40: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
51 Contig N50: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
52 Contig N60: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
53 Contig N70: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
54 Contig N80: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
55 Contig N90: 416949
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
56 Contig N100: 101
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
57 Contig L10: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
58 Contig L20: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
59 Contig L30: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
60 Contig L40: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
61 Contig L50: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
62 Contig L60: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
63 Contig L70: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
64 Contig L80: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
65 Contig L90: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
66 Contig L100: 6
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
67 Gap N10: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
68 Gap N20: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
69 Gap N30: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
70 Gap N40: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
71 Gap N50: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
72 Gap N60: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
73 Gap N70: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
74 Gap N80: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
75 Gap N90: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
76 Gap N100: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
77 Gap L10: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
78 Gap L20: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
79 Gap L30: 1
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
80 Gap L40: 2
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
81 Gap L50: 2
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
82 Gap L60: 2
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
83 Gap L70: 3
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
84 Gap L80: 3
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
85 Gap L90: 3
5799092ffdff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
bgruening
parents:
diff changeset
86 Gap L100: 3