Mercurial > repos > bgruening > pharmcat

annotate test-data/test_2.json @ 1:891283e0ee89 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
author bgruening
date Thu, 05 May 2022 20:27:17 +0000
parents d67642a21a1d
children
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0
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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diff changeset
2 "metadata": {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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diff changeset
3 "namedAlleleMatcherVersion": "1.0.0",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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4 "genomeBuild": "GRCh38.p13",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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diff changeset
5 "inputFilename": "input.vcf",
1
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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diff changeset
6 "timestamp": "May 4, 2022, 8:57:03 PM"
0
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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7 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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diff changeset
8 "results": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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9 {
1
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bgruening
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diff changeset
10 "alleleDefinitionVersion": "04/20/22",
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bgruening
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diff changeset
11 "chromosome": "chr4",
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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diff changeset
12 "gene": "ABCG2",
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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diff changeset
13 "diplotypes": [],
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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diff changeset
14 "haplotypes": [],
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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diff changeset
15 "phased": true,
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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16 "variants": [],
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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diff changeset
17 "variantsOfInterest": [],
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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18 "matchData": {
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bgruening
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diff changeset
19 "missingPositions": [
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bgruening
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20 {
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bgruening
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diff changeset
21 "chromosome": "chr4",
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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22 "position": 88131171,
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bgruening
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23 "cpicPosition": 88131171,
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bgruening
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24 "rsid": "rs2231142",
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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diff changeset
25 "chromosomeHgvsName": "g.88131171G\u003eT",
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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diff changeset
26 "cpicAlleles": [
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bgruening
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27 "G",
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bgruening
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28 "T"
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bgruening
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29 ],
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bgruening
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diff changeset
30 "cpicToVcfAlleleMap": {
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bgruening
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diff changeset
31 "T": "T",
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bgruening
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diff changeset
32 "G": "G"
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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33 },
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bgruening
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diff changeset
34 "ref": "G",
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bgruening
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diff changeset
35 "alts": [
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36 "T"
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bgruening
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37 ]
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bgruening
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38 }
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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39 ],
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
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diff changeset
40 "mismatchedAlleles": []
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bgruening
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41 },
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bgruening
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diff changeset
42 "uncallableHaplotypes": [
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bgruening
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43 "rs2231142 variant (T)",
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bgruening
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diff changeset
44 "rs2231142 reference (G)"
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bgruening
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45 ],
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bgruening
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diff changeset
46 "ignoredHaplotypes": []
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bgruening
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47 },
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bgruening
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diff changeset
48 {
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49 "alleleDefinitionVersion": "04/20/22",
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bgruening
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diff changeset
50 "chromosome": "chr1",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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51 "gene": "CACNA1S",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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52 "diplotypes": [
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bgruening
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53 {
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bgruening
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54 "name": "Reference/Reference",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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55 "haplotype1": {
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bgruening
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56 "name": "Reference",
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bgruening
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57 "sequences": [
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bgruening
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58 "201060815:C;201091993:G;"
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bgruening
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59 ]
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bgruening
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60 },
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bgruening
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61 "haplotype2": {
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bgruening
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62 "name": "Reference",
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bgruening
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63 "sequences": [
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bgruening
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diff changeset
64 "201060815:C;201091993:G;"
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bgruening
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65 ]
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bgruening
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66 },
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bgruening
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67 "score": 4
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bgruening
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68 }
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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69 ],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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70 "haplotypes": [
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bgruening
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71 {
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bgruening
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72 "name": "Reference",
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bgruening
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73 "sequences": [
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bgruening
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74 "201060815:C;201091993:G;"
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bgruening
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75 ]
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bgruening
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76 }
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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77 ],
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bgruening
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78 "phased": true,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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79 "variants": [
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bgruening
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80 {
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81 "position": 201060815,
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bgruening
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82 "rsid": "rs1800559",
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bgruening
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83 "vcfCall": "C|C"
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bgruening
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84 },
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bgruening
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85 {
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86 "position": 201091993,
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bgruening
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87 "rsid": "rs772226819",
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bgruening
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88 "vcfCall": "G|G"
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bgruening
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89 }
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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90 ],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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diff changeset
91 "variantsOfInterest": [],
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bgruening
parents:
diff changeset
92 "matchData": {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
95 },
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bgruening
parents:
diff changeset
96 "uncallableHaplotypes": [],
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bgruening
parents:
diff changeset
97 "ignoredHaplotypes": []
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bgruening
parents:
diff changeset
98 },
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bgruening
parents:
diff changeset
99 {
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bgruening
parents: 0
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
104 {
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
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bgruening
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bgruening
parents:
diff changeset
110 ]
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
116 ]
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bgruening
parents:
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117 },
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
119 }
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bgruening
parents:
diff changeset
120 ],
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bgruening
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diff changeset
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bgruening
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diff changeset
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bgruening
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diff changeset
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bgruening
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bgruening
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bgruening
parents:
diff changeset
126 ]
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bgruening
parents:
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127 }
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bgruening
parents:
diff changeset
128 ],
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
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bgruening
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bgruening
parents:
diff changeset
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bgruening
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135 },
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bgruening
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bgruening
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bgruening
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
140 },
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bgruening
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bgruening
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bgruening
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bgruening
parents:
diff changeset
144 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
145 },
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bgruening
parents:
diff changeset
146 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
149 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
150 },
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bgruening
parents:
diff changeset
151 {
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
154 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
155 },
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bgruening
parents:
diff changeset
156 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
159 "vcfCall": "C|C"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
160 },
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bgruening
parents:
diff changeset
161 {
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bgruening
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diff changeset
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
164 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
165 },
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bgruening
parents:
diff changeset
166 {
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bgruening
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
169 "vcfCall": "G|G"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
170 },
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bgruening
parents:
diff changeset
171 {
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bgruening
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diff changeset
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
parents:
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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260 },
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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diff changeset
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bgruening
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bgruening
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bgruening
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bgruening
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diff changeset
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bgruening
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bgruening
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bgruening
parents:
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
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bgruening
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diff changeset
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bgruening
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
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bgruening
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bgruening
parents:
diff changeset
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bgruening
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bgruening
parents:
diff changeset
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bgruening
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bgruening
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bgruening
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
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bgruening
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346 ]
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bgruening
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bgruening
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bgruening
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diff changeset
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bgruening
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diff changeset
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bgruening
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352 ]
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bgruening
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353 },
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bgruening
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diff changeset
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bgruening
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441 },
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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diff changeset
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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1008 },
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bgruening
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bgruening
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bgruening
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1018 },
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bgruening
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bgruening
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1023 },
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bgruening
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bgruening
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1028 },
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bgruening
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bgruening
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bgruening
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bgruening
parents:
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1038 },
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bgruening
parents:
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bgruening
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bgruening
parents:
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1043 },
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bgruening
parents:
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bgruening
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bgruening
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1048 },
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bgruening
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bgruening
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bgruening
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1053 },
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bgruening
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bgruening
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bgruening
parents:
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1058 },
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bgruening
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bgruening
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bgruening
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bgruening
parents:
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bgruening
parents:
diff changeset
1063 },
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bgruening
parents:
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1064 {
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bgruening
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bgruening
parents:
diff changeset
1067 "vcfCall": "G|G"
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bgruening
parents:
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1068 },
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1151 ]
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1159 "cpicAlleles": [
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1348 "chromosomeHgvsName": "g.94981258C\u003eT",
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1400 ],
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1432 ]
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1433 },
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1504 ]
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1514 ]
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1524 {
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diff changeset
1527 "vcfCall": "A|A"
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bgruening
parents:
diff changeset
1528 }
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bgruening
parents:
diff changeset
1529 ],
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bgruening
parents:
diff changeset
1530 "variantsOfInterest": [],
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bgruening
parents:
diff changeset
1531 "matchData": {
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bgruening
parents:
diff changeset
1532 "missingPositions": [],
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bgruening
parents:
diff changeset
1533 "mismatchedAlleles": []
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bgruening
parents:
diff changeset
1534 },
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bgruening
parents:
diff changeset
1535 "uncallableHaplotypes": [],
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bgruening
parents:
diff changeset
1536 "ignoredHaplotypes": []
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bgruening
parents:
diff changeset
1537 },
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bgruening
parents:
diff changeset
1538 {
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bgruening
parents: 0
diff changeset
1539 "alleleDefinitionVersion": "04/20/22",
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bgruening
parents:
diff changeset
1540 "chromosome": "chr1",
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bgruening
parents:
diff changeset
1541 "gene": "DPYD",
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bgruening
parents:
diff changeset
1542 "diplotypes": [
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bgruening
parents:
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1543 {
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bgruening
parents:
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bgruening
parents:
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bgruening
parents:
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bgruening
parents:
diff changeset
1547 "sequences": [
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bgruening
parents:
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bgruening
parents:
diff changeset
1549 ]
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bgruening
parents:
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1550 },
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bgruening
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bgruening
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bgruening
parents:
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bgruening
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bgruening
parents:
diff changeset
1555 ]
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bgruening
parents:
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1556 },
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bgruening
parents:
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1557 "score": 166
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bgruening
parents:
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1558 }
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bgruening
parents:
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1559 ],
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bgruening
parents:
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bgruening
parents:
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bgruening
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bgruening
parents:
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bgruening
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d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1565 ]
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bgruening
parents:
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1566 }
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bgruening
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1567 ],
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bgruening
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1568 "phased": true,
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bgruening
parents:
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1569 "variants": [
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bgruening
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bgruening
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bgruening
parents:
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1573 "vcfCall": "G|G"
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bgruening
parents:
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1574 },
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bgruening
parents:
diff changeset
1575 {
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bgruening
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bgruening
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bgruening
parents:
diff changeset
1578 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1579 },
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bgruening
parents:
diff changeset
1580 {
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bgruening
parents:
diff changeset
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bgruening
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bgruening
parents:
diff changeset
1583 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1584 },
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bgruening
parents:
diff changeset
1585 {
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bgruening
parents:
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bgruening
parents:
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bgruening
parents:
diff changeset
1588 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1589 },
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bgruening
parents:
diff changeset
1590 {
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bgruening
parents:
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bgruening
parents:
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bgruening
parents:
diff changeset
1593 "vcfCall": "A|A"
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bgruening
parents:
diff changeset
1594 },
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bgruening
parents:
diff changeset
1595 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
1597 "rsid": "rs202144771",
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bgruening
parents:
diff changeset
1598 "vcfCall": "G|G"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1599 },
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bgruening
parents:
diff changeset
1600 {
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
parents:
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bgruening
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bgruening
parents:
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bgruening
parents:
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bgruening
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bgruening
parents:
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1674 },
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bgruening
parents:
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bgruening
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bgruening
parents:
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1679 },
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bgruening
parents:
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bgruening
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bgruening
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1684 },
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bgruening
parents:
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bgruening
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bgruening
parents:
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1689 },
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bgruening
parents:
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bgruening
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bgruening
parents:
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bgruening
parents:
diff changeset
1694 },
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bgruening
parents:
diff changeset
1695 {
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parents:
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1699 },
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parents:
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1700 {
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1703 "vcfCall": "T|T"
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bgruening
parents:
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1704 },
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1705 {
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bgruening
parents:
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1708 "vcfCall": "C|C"
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bgruening
parents:
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1709 },
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bgruening
parents:
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1710 {
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bgruening
parents:
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1713 "vcfCall": "G|G"
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bgruening
parents:
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1714 },
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bgruening
parents:
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1715 {
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bgruening
parents:
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1718 "vcfCall": "TG|TG"
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bgruening
parents:
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1719 },
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bgruening
parents:
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1720 {
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bgruening
parents:
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1723 "vcfCall": "A|A"
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bgruening
parents:
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1724 },
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bgruening
parents:
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1725 {
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bgruening
parents:
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1728 "vcfCall": "A|A"
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bgruening
parents:
diff changeset
1729 },
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bgruening
parents:
diff changeset
1730 {
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bgruening
parents:
diff changeset
1733 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1734 },
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bgruening
parents:
diff changeset
1735 {
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bgruening
parents:
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1738 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1739 },
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bgruening
parents:
diff changeset
1740 {
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bgruening
parents:
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parents:
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bgruening
parents:
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1743 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
1744 },
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bgruening
parents:
diff changeset
1745 {
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parents:
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bgruening
parents:
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1748 "vcfCall": "C|C"
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bgruening
parents:
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1749 },
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bgruening
parents:
diff changeset
1750 {
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parents:
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bgruening
parents:
diff changeset
1753 "vcfCall": "A|A"
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bgruening
parents:
diff changeset
1754 },
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bgruening
parents:
diff changeset
1755 {
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bgruening
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parents:
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bgruening
parents:
diff changeset
1758 "vcfCall": "T|T"
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bgruening
parents:
diff changeset
1759 },
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bgruening
parents:
diff changeset
1760 {
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bgruening
parents:
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parents:
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bgruening
parents:
diff changeset
1763 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1764 },
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bgruening
parents:
diff changeset
1765 {
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bgruening
parents:
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bgruening
parents:
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bgruening
parents:
diff changeset
1768 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1769 },
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bgruening
parents:
diff changeset
1770 {
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bgruening
parents:
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parents:
diff changeset
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bgruening
parents:
diff changeset
1773 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
1774 },
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bgruening
parents:
diff changeset
1775 {
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bgruening
parents:
diff changeset
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parents:
diff changeset
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bgruening
parents:
diff changeset
1778 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1779 },
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bgruening
parents:
diff changeset
1780 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
1783 "vcfCall": "C|C"
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diff changeset
1784 },
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parents:
diff changeset
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bgruening
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1789 },
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
1794 },
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bgruening
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bgruening
parents:
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bgruening
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1799 },
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bgruening
parents:
diff changeset
1800 {
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bgruening
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diff changeset
1804 },
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bgruening
parents:
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bgruening
parents:
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bgruening
parents:
diff changeset
1809 },
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bgruening
parents:
diff changeset
1810 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
1814 },
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
1819 },
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bgruening
parents:
diff changeset
1820 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
1824 },
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bgruening
parents:
diff changeset
1825 {
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bgruening
parents:
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bgruening
parents:
diff changeset
1829 },
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bgruening
parents:
diff changeset
1830 {
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parents:
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
1834 },
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bgruening
parents:
diff changeset
1835 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
1839 },
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bgruening
parents:
diff changeset
1840 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
1844 },
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bgruening
parents:
diff changeset
1845 {
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bgruening
parents:
diff changeset
1848 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1849 },
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bgruening
parents:
diff changeset
1850 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
1854 },
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bgruening
parents:
diff changeset
1855 {
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bgruening
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parents:
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bgruening
parents:
diff changeset
1858 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
1859 },
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bgruening
parents:
diff changeset
1860 {
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parents:
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diff changeset
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bgruening
parents:
diff changeset
1863 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
1864 },
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bgruening
parents:
diff changeset
1865 {
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bgruening
parents:
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parents:
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bgruening
parents:
diff changeset
1868 "vcfCall": "T|T"
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bgruening
parents:
diff changeset
1869 },
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bgruening
parents:
diff changeset
1870 {
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bgruening
parents:
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parents:
diff changeset
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bgruening
parents:
diff changeset
1873 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
1874 },
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bgruening
parents:
diff changeset
1875 {
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bgruening
parents:
diff changeset
1876 "position": 97593322,
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bgruening
parents:
diff changeset
1877 "rsid": "rs183385770",
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bgruening
parents:
diff changeset
1878 "vcfCall": "C|C"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1879 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1880 {
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bgruening
parents:
diff changeset
1881 "position": 97593343,
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bgruening
parents:
diff changeset
1882 "rsid": "rs72549306",
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bgruening
parents:
diff changeset
1883 "vcfCall": "C|C"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1884 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1885 {
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bgruening
parents:
diff changeset
1886 "position": 97593379,
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bgruening
parents:
diff changeset
1887 "rsid": "rs201018345",
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bgruening
parents:
diff changeset
1888 "vcfCall": "C|C"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1889 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1890 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1891 "position": 97595083,
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bgruening
parents:
diff changeset
1892 "rsid": "rs145112791",
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bgruening
parents:
diff changeset
1893 "vcfCall": "G|G"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1894 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1895 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1896 "position": 97595088,
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bgruening
parents:
diff changeset
1897 "rsid": "rs150437414",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1898 "vcfCall": "A|A"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1899 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1900 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1901 "position": 97595149,
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bgruening
parents:
diff changeset
1902 "rsid": "rs146356975",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1903 "vcfCall": "T|T"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1904 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1905 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1906 "position": 97679170,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1907 "rsid": "rs45589337",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1908 "vcfCall": "T|T"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1909 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1910 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1911 "position": 97691776,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1912 "rsid": "rs1801266",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1913 "vcfCall": "G|G"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1914 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1915 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1916 "position": 97699399,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1917 "rsid": "rs72549307",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1918 "vcfCall": "T|T"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1919 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1920 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1921 "position": 97699430,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1922 "rsid": "rs72549308",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1923 "vcfCall": "T|T"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1924 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1925 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1926 "position": 97699474,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1927 "rsid": "rs115232898",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1928 "vcfCall": "T|T"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1929 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1930 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1931 "position": 97699506,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1932 "rsid": "rs6670886",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1933 "vcfCall": "C|C"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1934 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1935 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1936 "position": 97699533,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1937 "rsid": "rs139834141",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1938 "vcfCall": "C|C"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1939 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1940 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1941 "position": 97699535,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1942 "rsid": "rs2297595",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1943 "vcfCall": "T|T"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1944 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1945 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1946 "position": 97721542,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1947 "rsid": "rs200562975",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1948 "vcfCall": "T|T"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1949 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1950 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1951 "position": 97721650,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1952 "rsid": "rs141462178",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1953 "vcfCall": "T|T"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1954 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1955 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1956 "position": 97740400,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1957 "rsid": "rs150385342",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1958 "vcfCall": "C|C"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1959 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1960 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1961 "position": 97740410,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1962 "rsid": "rs72549309",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1963 "vcfCall": "GATGA|GATGA"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1964 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1965 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1966 "position": 97883329,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1967 "rsid": "rs1801265",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1968 "vcfCall": "A|A"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1969 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1970 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1971 "position": 97883352,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1972 "rsid": "rs80081766",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1973 "vcfCall": "C|C"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1974 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1975 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1976 "position": 97883353,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1977 "rsid": "rs72549310",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1978 "vcfCall": "G|G"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1979 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1980 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1981 "position": 97883368,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1982 "rsid": "rs150036960",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1983 "vcfCall": "G|G"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1984 }
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1985 ],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1986 "variantsOfInterest": [],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1987 "matchData": {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1988 "missingPositions": [],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1989 "mismatchedAlleles": []
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1990 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1991 "uncallableHaplotypes": [],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1992 "ignoredHaplotypes": []
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1993 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1994 {
1
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
parents: 0
diff changeset
1995 "alleleDefinitionVersion": "04/20/22",
0
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1996 "chromosome": "chr19",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1997 "gene": "IFNL3",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1998 "diplotypes": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
1999 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2000 "name": "rs12979860 reference (C)/rs12979860 reference (C)",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2001 "haplotype1": {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2002 "name": "rs12979860 reference (C)",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2003 "sequences": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2004 "39248147:C;"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2005 ]
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2006 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2007 "haplotype2": {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2008 "name": "rs12979860 reference (C)",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2009 "sequences": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2010 "39248147:C;"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2011 ]
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2012 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2013 "score": 2
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2014 }
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2015 ],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2016 "haplotypes": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2017 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2018 "name": "rs12979860 reference (C)",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2019 "sequences": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2020 "39248147:C;"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2021 ]
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2022 }
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2023 ],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2024 "phased": true,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2025 "variants": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2026 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2027 "position": 39248147,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2028 "rsid": "rs12979860",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2029 "vcfCall": "C|C"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2030 }
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2031 ],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2032 "variantsOfInterest": [],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2033 "matchData": {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2034 "missingPositions": [],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2035 "mismatchedAlleles": []
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2036 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2037 "uncallableHaplotypes": [],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2038 "ignoredHaplotypes": []
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2039 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2040 {
1
891283e0ee89 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"
bgruening
parents: 0
diff changeset
2041 "alleleDefinitionVersion": "04/20/22",
0
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2042 "chromosome": "chr13",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2043 "gene": "NUDT15",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2044 "diplotypes": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2045 {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2046 "name": "*1/*1",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2047 "haplotype1": {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2048 "name": "*1",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2049 "sequences": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2050 "48037748:T;48037749:G;48037782:AGGAGTC;48037798:G;48037825:C;48037834:C;48037847:G;48037849:A;48037885:G;48037902:C;48040977:GA;48041103:T;48041113:G;48045690:C;48045719:C;48045720:G;48045771:T;"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2051 ]
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2052 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2053 "haplotype2": {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2054 "name": "*1",
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2055 "sequences": [
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
2056 "48037748:T;48037749:G;48037782:AGGAGTC;48037798:G;48037825:C;48037834:C;48037847:G;48037849:A;48037885:G;48037902:C;48040977:GA;48041103:T;48041113:G;48045690:C;48045719:C;48045720:G;48045771:T;"
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diff changeset
2057 ]
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bgruening
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diff changeset
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bgruening
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diff changeset
2091 },
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bgruening
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diff changeset
2092 {
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bgruening
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bgruening
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2096 },
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bgruening
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bgruening
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bgruening
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2101 },
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bgruening
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bgruening
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bgruening
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2106 },
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bgruening
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bgruening
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diff changeset
2110 "vcfCall": "A|A"
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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2121 },
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bgruening
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bgruening
parents:
diff changeset
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bgruening
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2126 },
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bgruening
parents:
diff changeset
2127 {
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bgruening
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diff changeset
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bgruening
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2131 },
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bgruening
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bgruening
parents:
diff changeset
2135 "vcfCall": "G|G"
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bgruening
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2136 },
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bgruening
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bgruening
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diff changeset
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bgruening
parents:
diff changeset
2141 },
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bgruening
parents:
diff changeset
2142 {
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bgruening
parents:
diff changeset
2145 "vcfCall": "C|C"
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bgruening
parents:
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2146 },
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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2222 },
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bgruening
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bgruening
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2227 },
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bgruening
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parents:
diff changeset
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parents:
diff changeset
2231 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2232 },
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bgruening
parents:
diff changeset
2233 {
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parents:
diff changeset
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bgruening
parents:
diff changeset
2237 },
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parents:
diff changeset
2238 {
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parents:
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2241 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
2242 },
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bgruening
parents:
diff changeset
2243 {
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bgruening
parents:
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2247 },
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bgruening
parents:
diff changeset
2248 {
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parents:
diff changeset
2251 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2252 },
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bgruening
parents:
diff changeset
2253 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2257 },
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bgruening
parents:
diff changeset
2258 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2262 },
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bgruening
parents:
diff changeset
2263 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2267 },
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bgruening
parents:
diff changeset
2268 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2272 },
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bgruening
parents:
diff changeset
2273 {
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parents:
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2277 },
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bgruening
parents:
diff changeset
2278 {
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parents:
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2282 },
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bgruening
parents:
diff changeset
2283 {
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bgruening
parents:
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2286 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2287 },
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bgruening
parents:
diff changeset
2288 {
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bgruening
parents:
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2291 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2292 },
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bgruening
parents:
diff changeset
2293 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2296 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
2297 },
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bgruening
parents:
diff changeset
2298 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2301 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2302 },
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bgruening
parents:
diff changeset
2303 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2306 "vcfCall": "TGGA|TGGA"
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bgruening
parents:
diff changeset
2307 },
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bgruening
parents:
diff changeset
2308 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2311 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2312 },
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bgruening
parents:
diff changeset
2313 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2316 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
2317 },
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bgruening
parents:
diff changeset
2318 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2320 "rsid": "rs193922807",
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bgruening
parents:
diff changeset
2321 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2322 },
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bgruening
parents:
diff changeset
2323 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2327 },
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bgruening
parents:
diff changeset
2328 {
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parents:
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bgruening
parents:
diff changeset
2332 },
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bgruening
parents:
diff changeset
2333 {
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bgruening
parents:
diff changeset
2337 },
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bgruening
parents:
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2338 {
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parents:
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bgruening
parents:
diff changeset
2342 },
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bgruening
parents:
diff changeset
2343 {
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parents:
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bgruening
parents:
diff changeset
2347 },
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bgruening
parents:
diff changeset
2348 {
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bgruening
parents:
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bgruening
parents:
diff changeset
2352 },
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bgruening
parents:
diff changeset
2353 {
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bgruening
parents:
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bgruening
parents:
diff changeset
2357 },
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bgruening
parents:
diff changeset
2358 {
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bgruening
parents:
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bgruening
parents:
diff changeset
2362 },
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bgruening
parents:
diff changeset
2363 {
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diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2367 },
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bgruening
parents:
diff changeset
2368 {
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bgruening
parents:
diff changeset
2371 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2372 },
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bgruening
parents:
diff changeset
2373 {
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bgruening
parents:
diff changeset
2376 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2377 },
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bgruening
parents:
diff changeset
2378 {
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parents:
diff changeset
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bgruening
parents:
diff changeset
2381 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2382 },
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bgruening
parents:
diff changeset
2383 {
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parents:
diff changeset
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parents:
diff changeset
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bgruening
parents:
diff changeset
2386 "vcfCall": "A|A"
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bgruening
parents:
diff changeset
2387 },
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bgruening
parents:
diff changeset
2388 {
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bgruening
parents:
diff changeset
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parents:
diff changeset
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bgruening
parents:
diff changeset
2391 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
2392 },
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bgruening
parents:
diff changeset
2393 {
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bgruening
parents:
diff changeset
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parents:
diff changeset
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bgruening
parents:
diff changeset
2396 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
2397 },
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bgruening
parents:
diff changeset
2398 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2401 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
2402 },
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bgruening
parents:
diff changeset
2403 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2406 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2407 },
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bgruening
parents:
diff changeset
2408 {
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
2411 "vcfCall": "G|G"
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bgruening
parents:
diff changeset
2412 },
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bgruening
parents:
diff changeset
2413 {
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2444 ]
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2445 },
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2447 }
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2448 ],
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2455 }
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bgruening
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bgruening
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2478 },
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bgruening
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2479 {
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bgruening
parents:
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bgruening
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2483 },
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bgruening
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bgruening
parents:
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bgruening
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2488 },
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bgruening
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bgruening
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bgruening
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2493 },
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bgruening
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bgruening
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bgruening
parents:
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2498 },
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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2737 ]
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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2743 ]
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bgruening
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bgruening
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bgruening
parents:
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bgruening
parents:
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2747 ],
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
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2753 ]
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bgruening
parents:
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2754 }
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bgruening
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2755 ],
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bgruening
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2756 "phased": true,
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bgruening
parents:
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bgruening
parents:
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bgruening
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bgruening
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bgruening
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bgruening
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bgruening
parents:
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2766 "vcfCall": "T|T"
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2802 },
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2807 },
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bgruening
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bgruening
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2817 },
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bgruening
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2827 },
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bgruening
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2832 },
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bgruening
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bgruening
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2837 },
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bgruening
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bgruening
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2842 },
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bgruening
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2847 },
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bgruening
parents:
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bgruening
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2852 },
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bgruening
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bgruening
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bgruening
parents:
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2857 },
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bgruening
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3041 "ignoredHaplotypes": []
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3042 },
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3043 {
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bgruening
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diff changeset
3044 "alleleDefinitionVersion": "04/20/22",
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d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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diff changeset
3045 "chromosome": "chr16",
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bgruening
parents:
diff changeset
3046 "gene": "VKORC1",
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bgruening
parents:
diff changeset
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bgruening
parents:
diff changeset
3048 {
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bgruening
parents:
diff changeset
3049 "name": "rs9923231 reference (C)/rs9923231 reference (C)",
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bgruening
parents:
diff changeset
3050 "haplotype1": {
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
3052 "sequences": [
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bgruening
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bgruening
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diff changeset
3054 ]
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bgruening
parents:
diff changeset
3055 },
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bgruening
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diff changeset
3056 "haplotype2": {
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bgruening
parents:
diff changeset
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bgruening
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diff changeset
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bgruening
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3059 "31096368:C;"
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bgruening
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diff changeset
3060 ]
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bgruening
parents:
diff changeset
3061 },
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bgruening
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diff changeset
3062 "score": 2
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3063 }
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bgruening
parents:
diff changeset
3064 ],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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diff changeset
3065 "haplotypes": [
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bgruening
parents:
diff changeset
3066 {
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bgruening
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diff changeset
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bgruening
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diff changeset
3068 "sequences": [
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bgruening
parents:
diff changeset
3069 "31096368:C;"
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bgruening
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diff changeset
3070 ]
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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diff changeset
3071 }
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bgruening
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diff changeset
3072 ],
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bgruening
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diff changeset
3073 "phased": true,
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
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diff changeset
3074 "variants": [
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bgruening
parents:
diff changeset
3075 {
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bgruening
parents:
diff changeset
3076 "position": 31096368,
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bgruening
parents:
diff changeset
3077 "rsid": "rs9923231",
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bgruening
parents:
diff changeset
3078 "vcfCall": "C|C"
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bgruening
parents:
diff changeset
3079 }
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bgruening
parents:
diff changeset
3080 ],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3081 "variantsOfInterest": [],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3082 "matchData": {
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3083 "missingPositions": [],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3084 "mismatchedAlleles": []
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3085 },
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bgruening
parents:
diff changeset
3086 "uncallableHaplotypes": [],
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bgruening
parents:
diff changeset
3087 "ignoredHaplotypes": []
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3088 }
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bgruening
parents:
diff changeset
3089 ],
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3090 "vcfWarnings": {}
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
bgruening
parents:
diff changeset
3091 }