Mercurial > repos > bgruening > repeat_masker

comparison test-data/small.fasta.stats @ 3:bdfc22c1c3e3 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
author iuc
date Wed, 02 May 2018 20:18:11 -0400
parents
children 04f5c3d7448e
comparison
equal deleted inserted replaced
2:5673e72241aa 3:bdfc22c1c3e3
1 ==================================================
2 file name: dataset_12.dat
3 sequences: 1
4 total length: 14220 bp (14220 bp excl N/X-runs)
5 GC level: 39.94 %
6 bases masked: 378 bp ( 2.66 %)
7 ==================================================
8 number of length percentage
9 elements* occupied of sequence
10 --------------------------------------------------
11 SINEs: 0 0 bp 0.00 %
12 ALUs 0 0 bp 0.00 %
13 MIRs 0 0 bp 0.00 %
14
15 LINEs: 0 0 bp 0.00 %
16 LINE1 0 0 bp 0.00 %
17 LINE2 0 0 bp 0.00 %
18 L3/CR1 0 0 bp 0.00 %
19
20 LTR elements: 0 0 bp 0.00 %
21 ERVL 0 0 bp 0.00 %
22 ERVL-MaLRs 0 0 bp 0.00 %
23 ERV_classI 0 0 bp 0.00 %
24 ERV_classII 0 0 bp 0.00 %
25
26 DNA elements: 0 0 bp 0.00 %
27 hAT-Charlie 0 0 bp 0.00 %
28 TcMar-Tigger 0 0 bp 0.00 %
29
30 Unclassified: 0 0 bp 0.00 %
31
32 Total interspersed repeats: 0 bp 0.00 %
33
34
35 Small RNA: 0 0 bp 0.00 %
36
37 Satellites: 0 0 bp 0.00 %
38 Simple repeats: 8 378 bp 2.66 %
39 Low complexity: 0 0 bp 0.00 %
40 ==================================================
41
42 * most repeats fragmented by insertions or deletions
43 have been counted as one element
44
45
46 The query species was assumed to be homo
47 RepeatMasker Combined Database: Dfam_Consensus-20170127
48
49 run with rmblastn version 2.2.27+
50 The query was compared to unclassified sequences in ".../dataset_2.dat"
51