Mercurial > repos > bgruening > trim_galore

annotate test-data/sanger_full_range_report_results1.txt @ 15:084bbd8ba7b8 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 10a9de2adae04249830c880cf0c55edaa196f3f7
author bgruening
date Tue, 30 Jul 2019 06:26:49 -0400
parents 80cd83b11214
children cd7e644cae1d
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2 SUMMARISING RUN PARAMETERS
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3 ==========================
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4 Input filename: input_1.fastq
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5 Trimming mode: single-end
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6 Trim Galore version: 0.6.3
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7 Cutadapt version: 2.4
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8 Number of cores used for trimming: 1
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9 Quality Phred score cutoff: 20
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10 Quality encoding type selected: ASCII+33
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11 Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection))
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12 Maximum trimming error rate: 0.1 (default)
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13 Minimum required adapter overlap (stringency): 1 bp
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14 Minimum required sequence length before a sequence gets removed: 20 bp
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17 This is cutadapt 2.4 with Python 3.7.3
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18 Command line parameters: -j 1 -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq
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19 Processing reads on 1 core in single-end mode ...
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20 Finished in 0.00 s (1608 us/read; 0.04 M reads/minute).
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22 === Summary ===
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24 Total reads processed: 2
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25 Reads with adapters: 1 (50.0%)
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26 Reads written (passing filters): 2 (100.0%)
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28 Total basepairs processed: 188 bp
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29 Quality-trimmed: 20 bp (10.6%)
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30 Total written (filtered): 167 bp (88.8%)
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32 === Adapter 1 ===
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33
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34 Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 1 times.
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36 No. of allowed errors:
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37 0-9 bp: 0; 10-13 bp: 1
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39 Bases preceding removed adapters:
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40 A: 0.0%
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41 C: 100.0%
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42 G: 0.0%
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43 T: 0.0%
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44 none/other: 0.0%
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46 Overview of removed sequences
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47 length count expect max.err error counts
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48 1 1 0.5 0 1
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50 RUN STATISTICS FOR INPUT FILE: input_1.fastq
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51 =============================================
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52 2 sequences processed in total
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53 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%)
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