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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="cutadapt" version="1.1">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://cutadapt.googlecode.com/files/cutadapt-1.1.tar.gz</action>
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7 <action type="move_directory_files">
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8 <source_directory>bin</source_directory>
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9 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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10 </action>
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11 <action type="move_directory_files">
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12 <source_directory>cutadapt</source_directory>
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13 <destination_directory>$INSTALL_DIR/cutadapt</destination_directory>
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14 </action>
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15 <action type="set_environment">
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16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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17 </action>
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18 </actions>
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19 </install>
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20 <readme>
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21 </readme>
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22 </package>
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23 <package name="fastqc" version="0.10.1">
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24 <install version="1.0">
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25 <actions>
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26 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
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27 <action type="move_directory_files">
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28 <source_directory>../FastQC/</source_directory>
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29 <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
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30 </action>
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31 <action type="set_environment">
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32 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/FastQC</environment_variable>
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33 </action>
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34 </actions>
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35 </install>
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36 <readme>
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37 FastQC needs a java Runtime Environment.
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38 </readme>
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39 </package>
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40 </tool_dependency>
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41
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42
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43
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