Mercurial > repos > bimib > cobraxy

changeset 301:5a595a737220 draft

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Uploaded
author francesco_lapi
date Tue, 20 May 2025 14:47:56 +0000
parents 24783af8a2f9
children 753347af8bc9
files COBRAxy/marea.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/marea.xml	Tue May 20 14:47:38 2025 +0000
+++ b/COBRAxy/marea.xml	Tue May 20 14:47:56 2025 +0000
@@ -179,12 +179,13 @@
 			</param>
 
 			<when value="true">
-				<param name="test" argument="--test" type="select" label="Statistical test to use:" help="Select the statistical test to use for the analysis based on your data and the amount of replicates.">
+				<param name="test" argument="--test" type="select" label="Statistical test to use:" help="Select the statistical test to use for the analysis based on your data and the amount of replicates.  Paired T-test and Wilcoxon need the same number of replicates in each group.">
 					<option value="ks" selected="true">Kolmogorov-Smirnov</option>
 					<option value="ttest_p">T-test (paired)</option>
 					<option value="ttest_ind">T-test (unpaired)</option>
 					<option value="wilcoxon">Wilcoxon</option>
 					<option value="mw">Mann-Whitney</option>
+					<option value="DESeq">DESeq2 like statistical test</option>
 				</param>
 				<param name="pValue" argument="--pValue" type="float" size="20" value="0.05" max="1" min="0" label="P-value threshold:" help="min value 0" />
 				<param name="adjusted" argument="--adjusted" type="boolean" checked="false" label="Use adjusted p-values" help="Should the program adjust the P-values based on the FDR (Benjamini-Hochberg) correction?" />