Mercurial > repos > bimib > cobraxy

changeset 6:deb6d3439342 draft

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Uploaded
author luca_milaz
date Wed, 18 Sep 2024 12:00:49 +0000
parents aaad8c11b7d6
children 515cd9e4f518
files COBRAxy/custom_data_generator.xml
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
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line diff
--- a/COBRAxy/custom_data_generator.xml	Wed Sep 18 11:02:44 2024 +0000
+++ b/COBRAxy/custom_data_generator.xml	Wed Sep 18 12:00:49 2024 +0000
@@ -43,7 +43,8 @@
 What it does
 -------------
 
-This tool generates two files containing reactions and rules respectively, starting from a custom model in JSON or XML format, that can be used as inputs for the RAS and RPS generator modules.
+This tool generates four files containing reactions, rules, reaction bounds and medium composition respectively, starting from a custom model in JSON or XML format.
+Reactions and rules can be used as inputs for the RAS and RPS generator tools.
 
 Accepted files:
     - A model: JSON or XML file reporting reactions and rules contained in the model.   
@@ -55,6 +56,8 @@
 The tool generates:
     - rules: reporting the rules for each reaction in the custom model given. Format: csv or pickle.
     - reactions: reporting the reactions in the custom model given. Format: csv or pickle.
+    - reaction bounds: reporting the lower and upper bounds of each model reaction. Format: csv or pickle.
+    - medium composition: reporting the list of exchange/transport reactions. Format: csv or pickle.
     - a log file (.txt).
     ]]>
     </help>