Mercurial > repos > bitlab > bitlab
comparison gecko/frags2align.xml @ 1:35af401890c0 draft
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| author | bitlab |
|---|---|
| date | Thu, 13 Dec 2018 07:59:25 -0500 |
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| 0:ee6b15b409e5 | 1:35af401890c0 |
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| 1 <tool id="frags2align" name="Frags to align"> | |
| 2 <description>Extract alignments from a binary Frags file</description> | |
| 3 <inputs> | |
| 4 <param name="fragsFile" type="data" format="frags" label="Frags file" help="Binary Frags file" /> | |
| 5 <param name="fastaX" type="data" format="fasta" label="x Genome" help="Single genome file in fasta format"/> | |
| 6 <param name="fastaY" type="data" value="fasta" label="y Genome" help="Single genome file in fasta format" /> | |
| 7 </inputs> | |
| 8 <command>/home/galaxy-bitlab/galaxy/tools/gecko/bin/frags2align.sh $fragsFile $fastaX $fastaY $alignments </command> | |
| 9 <outputs> | |
| 10 <data name="alignments" format="txt" label="Frags to align for genomes ${fastaX.name}_${fastaY.name}"/> | |
| 11 </outputs> | |
| 12 </tool> | |
| 13 |