Mercurial > repos > bitlab > bitlab
diff gecko/frags2align.xml @ 1:35af401890c0 draft
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author | bitlab |
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date | Thu, 13 Dec 2018 07:59:25 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gecko/frags2align.xml Thu Dec 13 07:59:25 2018 -0500 @@ -0,0 +1,13 @@ +<tool id="frags2align" name="Frags to align"> + <description>Extract alignments from a binary Frags file</description> + <inputs> + <param name="fragsFile" type="data" format="frags" label="Frags file" help="Binary Frags file" /> + <param name="fastaX" type="data" format="fasta" label="x Genome" help="Single genome file in fasta format"/> + <param name="fastaY" type="data" value="fasta" label="y Genome" help="Single genome file in fasta format" /> + </inputs> + <command>/home/galaxy-bitlab/galaxy/tools/gecko/bin/frags2align.sh $fragsFile $fastaX $fastaY $alignments </command> + <outputs> + <data name="alignments" format="txt" label="Frags to align for genomes ${fastaX.name}_${fastaY.name}"/> + </outputs> +</tool> +